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The Many Forms of NIST 2020 MS Libraries
Steve SteinNIST Mass Spectrometry Data CenterBiomolecular Measurement Division
Key MS Library Qualities
• Coverage• How big is it – NO!• Contains spectra of interest – YES!
• at conditions of interest
• Quality• Can you rely on it?• All spectra curated, intercompared using best possible software
• Software• Find and confirm identification• Assists if compound not in library
Tandem Library
EI Library
Available Chemicals
Coverage: Compound Selection
N
N N
N
CH3O
O
CH3
CH3
RYYVLZVUVIJVGH-UHFFFAOYSA-N
InChI
Wikipedia
HMDB
KEGG
FoodDB
EPA/FDA Lists
Drug Bank
30+ Collections
...
Combine & Rank
Acquire
GC/MS AMDISCustomLibrary
2nd
Evaluator
Chemicals of Interest
Available Chemicals
Chemical Inventory
Hold
3nd
Evaluator
NIST 2020
Acquire
Spectra & RI
InChIKey
Structures, Names
Resolve Inconsistencies
AcceptReject
Select Best Replicate
QC Software
Final Evaluator
Assemble
For all evaluations:Structure Search
Hybrid SearchMS Interpreter
Quality: EI Evaluation
TandemYang MOD 2:15Liang WOB 2:30
MS INTERPRETER
CONNECT PEAKS TO
STRUCTURES
MAJOR UPDATE
NISTMS.EXE
USER INTERFACE
HYBRID SEARCH
FOR COMPOUNDS NOT
IN LIBRARY
NEW AI RETENTION INDEX
ESTIMATES
SOFTWARE
Hybrid SearchIdentify Compounds Not in Library
MOD pm 3:50: Cooper et al.
OcinaplonAnxiolytic
drug
1,000s of New Compounds of Analytical InterestHuman & Plant MetabolitesFlavor/Fragrance – FoodDrugs & their MetabolitesForensics, ToxinsPesticides –ContaminantsIndustrial Chemicals Petrochemicals, Surfactants, Lipids, …
Also TMS, Ac and Me Derivatives
UWA-101Parkinson’s
drug
MK-212Serotonin
Agonist
PretomanidAntibiotic
Gardenia amideFlavor/Fragrance
BenfuresateHerbicide
LoliolidePlant
Metabolite
NIST/EPA/NIH EI MS Library – NIST 20
306,869 Compounds, 43,774 Replicate Spectra
40 K More Compounds than NIST 17
NIST Tandem Mass Spectral Library2020 Release
31K Compounds, 2X More than 2017186K Precursor Ions - 1.3M Spectra
Compounds: Fragmentation Methods27,840 HRAM (High Res Accurate Mass)29,890 QTOF, HCD, IT-HRAM, QqQ29,444 Ion Trap (Low Res., up to MS4)246 APCI HRAM ‘Extractables and Leachables’
Precursor Ion Types26,575 Protonated12,589 Deprotonated10,032 Water/Ammonia Loss24,167 Other In-Source Generated
CAS# 4261-42-1 C21H20O11 (hr_msms_nist2020_v42) Isoorientin [M+H]+ IT-FT 35%
P=449.1
280 300 320 340 360 380 400 420 440 4600
50
100
C17H13O7=p-C4H8O4
C20H15O8=p-CH6O3
C21H19O10=p-H2O
OH
HO
O
O
O
OH
HO
HO
HO
OH
OH
CAS# 121-75-5 C10H19O6PS2 (hr_msms_nist2020_v42) Malathion [M+H]+ HCD
10% 6 P=331
90 120 150 180 210 240 270 300 3300
50
100
C6H7O3=p-C4H13O3PS2
C8H13O4=p-C2H7S2O2P
C8H14O5PS2=p-C2H6O
p
S
P
O
O
OO
S
O
O
CAS# 67-97-0 C27H44O (hr_msms_nist2020_v42) Cholecalciferol [M+H]+ HCD 35%
2 P=385.3
80 120 160 200 240 280 320 360 4000
50
100
C9H13=p-C18H32O
C19H31=p-C8H14O
p
H
H
HO
CAS# 115550-35-1 C17H19FN4O4 (hr_msms_nist2020_v42) Marbofloxacin [M+H]+ IT
-FT 35% P=363.1
230 240 250 260 270 280 290 300 310 320 330 340 350 360 3700
50
100
C14FH15N3O2=p-C3H5NO2
C15FH15N3O4=p-C2H5N
C17FH18N4O3=p-H2ON
N
F
O
N
NO
OH
O
Vitamin D3Metabolite
CAS# 91-20-3 C10H8 (apci_msms_nist2020_v12) Naphthalene [M]+. QTOF 30V
P=128.1
70 80 90 100 110 120 130 1400
50
100
C6H6=p-C4H2
C8H6=p-C2H2
p
CAS# 437-38-7 C22H28N2O (hr_msms_nist2020_v42) Fentanyl [M+H]+ HCD 50% 3
P=337.2
60 90 120 150 180 210 240 270 300 3300
50
100
C8H9=p-C14H20N2O
C13H18N=p-C9H11NO
C19H25N2=p-C3H4Op
N
O
N
FentanylDrug
MalathionInsecticide
Luteolin glucoside Flavone
Fuc-GM1(d18:1/16:0)Glycolipid
2020 Tandem LibraryWide Range of Compounds
LopinavirAntiviral
NaphthaleneE&L, APCI
Marbofloxacin Antibiotic
• Annotated Recurrent Unidentified Spectra (ARUS)• Good quality, RUS converted to ‘consensus’ spectra
• Annotated by Hybrid Search, then by Evaluator
• LC/MS – Milk Oligos, Urine and Plasma/Serum, Acylcarnitines
• GC/MS – RI in Essential Oils/Foods
• Available: http://chemdata.NIST.gov/• Documented in Multiple Papers
• Urine/Plasma Updated for NIST 2020 Tandem Library
Coverage:Recurring, Unidentified Spectra
From Multiple NIST Standard Reference Materials
Plasma/Serum, Urine, MilkPos/Neg, Chemdata.NIST.gov
LC/MS ARUSHybrid Identified HRAM Spectra
Simon et al. TP 392
Peptide Library – 2020 Version
85% increase in peptide ions 489,921 (2016) -> 911,783
25% to 36% proteome coverage
Quality – 7 quality filters1 spectrum/peptide ion
Peptide.NIST.gov
ThP 291: Sheetlin et al.