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Predictive Cancer Models Using Patient-Derived Xenograft Mice Technical Information Services April 9, 2020

Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

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Page 1: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Predictive Cancer Models

Using Patient-Derived

Xenograft Mice

Technical Information Services

April 9, 2020

Page 2: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

THE JACKSON LABORATORY™

To discover precise genomic

solutions for disease and

empower the global biomedical

community in our shared quest

to improve human health

Our Mission

Page 3: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

WHAT WE DO AND PROVIDE• Biomedical Research

Genetics, biology, and mechanism of human diseases

• Mouse Models and Related Contract Research Services

Preclinical/Translational: Study-ready mouse models, mouse model generation, breeding, cryopreservation, in vivo preclinical studies– including target identification and confirmation, PK studies, efficacy studies, and more

Clinical: Specialty clinical services and assays; the JAX™ Clinical Knowledgebase (JAX-CKB)

• Education & Training

Courses, conferences, internships, pre-and post-doctoral training, live and on-

demand webinars, and on-site seminars

Page 4: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

JAX™ MICE

• Strains developed from NIH-funding.

• >11,000 publically available mouse lines

…and growing.

>3 million mice shipped annually worldwide

• Unsurpassed genetic quality and animal

health.

• Comprehensive phenotypic descriptions

and references.

• Home to common inbred strains (C57BL/6J,

BALB/cJ, etc.) that support the

development/collection of specialty strains

and the JAX biomedical research mission.

The Gold Standard for Biomedical Research

Page 5: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Online Resources to Support and Expedite Your Research

JAX™ Mice Database

jax.org/mouse-search

Mouse Genome Informatics

informatics.jax.org/

Mouse Phenome Database

phenome.jax.org/

Mouse Tumor Biology Database

jax.org/mtb

JAX™ Clinical Knowledgebase

ckbhome.jax.org

Page 6: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Learning Goals

6

Describe how NSG™ are a

useful platform for human

disease research

Demonstrate how PDX models

are used for predictive and

preclinical research

Review Onco-Hu™ models for

immuno-oncology research

Page 7: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Are you currently using patient-

derived xenograft (PDX) models in

your research?

Yes

No, but I am planning to within the next 6 months

No, but I want to learn about PDX models

I do not know

7

Page 8: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

The Need for New Preclinical Models

8

Kola 2004. Nat Rev Drug Discov. PMID:15286737

Sharpless 2006 Nat Rev Drug Discov PMID:16915232

Only 5% of cancer treatments

entering clinical trials are

approved

Major causes of attrition are

lack of efficacy (30%) and

safety (30%)

Use of more predictive animal

models is needed during

preclinical testing to diminish

attrition

Page 9: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Vehicle Merodantoin

Classic Xenograft Model: Nude Mouse

9

Gulliya 1994 Cancer PMID:8082074

MCF-7 breast cancer cell line

Page 10: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Immune System Components

10

Dendritic

cells

Page 11: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

NSG™, a Highly Immunodeficient Mouse

NOD backgroundo Absence of hemolytic complement

o Reduced dendritic and NK cell function

o Defective macrophages

o A more human-like Sirpa allele on macrophages

11

Nomenclature

NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ (005557)

JAX™ Mice |

Page 12: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

NSG™, a Highly Immunodeficient Mouse

NOD backgroundo Absence of hemolytic complement

o Reduced dendritic and NK cell function

o Defective macrophages

o A more human-like Sirpa allele on macrophages

scid mutationo prevents development of mature T and B cells

12

Nomenclature

NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ (005557)

JAX™ Mice |

Page 13: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

NSG™, a Highly Immunodeficient Mouse

NOD backgroundo Absence of hemolytic complement

o Reduced dendritic and NK cell function

o Defective macrophages

o A more human-like Sirpa allele on macrophages

scid mutationo prevents development of mature T and B cells

gamma chain (Il2rg knockout)o Eliminates signaling from 6 distinct interleukins and blocks NK cell

development

13

Nomenclature

NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ (005557)

JAX™ Mice |

Page 14: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Immune System Components

14

(NSGTM)

Dendritic cells

Page 15: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Applications and Benefitso No scid-associated leakiness

o Longer life span than NOD-scid (> 16 months)

o Enhanced primary human tumor and hematopoietic stem cell

engraftment (Sirpa allele) – immuno-oncology applications

15

Using NSG™ as a Platform for Human

Disease Research

Page 16: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Applications and Benefitso No scid-associated leakiness

o Longer life span than NOD-scid (> 16 months)

o Enhanced primary human tumor and hematopoietic stem cell

engraftment (Sirpa allele) – immuno-oncology applications

Considerationso Extremely immunodeficient: require aseptic housing and

handling

o scid side effects: radiation sensitivity; genotoxic drugs may

have higher toxicity

16

Using NSG™ as a Platform for Human

Disease Research

Page 17: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Which mouse strain is more likely

to engraft primary human cells?

BALB/c scid

NOD scid

17

Page 18: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

JAX Patient-Derived Xenograft (PDX)

Program

18

Clinical information

o Tumor type, grade and markers (if known)

o Treatment history

Histology

Gene expression array and CNV array analysis

o Target cancer panel for mutation analysis

Archived

PDX

tumors

In Vivo Pharmacology Services |

Page 19: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

PDX Development Process

19In Vivo Pharmacology Services |

Archived

PDX

tumors

Cohort of miceDonor mice

Multi-step approach for the development of cohorts of patient derived

xenograft mouse models

Study

Page 20: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Established PDX Models

20

~400 clinically relevant PDX tumors

In Vivo Pharmacology Services |

Page 21: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

NSG™

C.B-17

scid

H&E Human cells

(anti-HLA)

Mouse blood cells

(anti-mCd45)

H&E

Cancer

Patient’s Lung

Tumor

Fragment

NSG™ Mice Preserve Patient Tumor

Characteristics

21

Simpson-Abelson 2008 J Immunol PMID:18453623

Page 22: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Pa

tie

nt tu

mo

rE

ng

raft

ed

tum

or

H&E Cytokeratin Ki67

NSG™ Mice Preserve Patient Tumor

Characteristics

22

Simpson-Abelson 2008 J Immunol PMID:18453623

Page 23: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Colon PDX Structure Fidelity

23In Vivo Pharmacology Services |

TM00388-P0TM00388-PT

Colon Adenocarcinoma Metastatic to Lung

TM00134-PT TM00134-P0 TM00134-P1

Colon Adenocarcinoma, KRAS G13D

Page 24: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

BL0293f563P2 PDX Tumor Volume Response

to Cisplatin Single Agent Treatment (1500 mm3 tumor endpoint)

Days(Day 1 = treatment initiation)

me

an

tu

mo

r v

olu

me

(m

m3;+

/- S

E)

0 5 10 15 20 25 30 35 40 45 50 55 60 650

250

500

750

1000

1250

1500

Group 1: Saline Control

Group 2: Cisplatin 2.5 mg/kg

Bladder PDX ModelsStandard of Care Treatment Response

24In Vivo Pharmacology Services |

TM00016-P2 PDX tumor volume response to Cisplatin Single Agent

Treatment (1500 mm3 endpoint)

Page 25: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

0 5 10 15 20 25 30 35 40 45 50 55 60 650

500

1000

1500

2000

2500

Days(Day 1 = treatment initiation)

Ind

ivid

ua

l T

um

or

Vo

lum

e (

mm

3)

Bladder PDX ModelsTumor Heterogeneity

25In Vivo Pharmacology Services |

TM00016-P2 PDX tumor volume response to Cisplatin

Page 26: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

BL0269f404P2 PDX Tumor Volume Response

to Cisplatin Single Agent Treatment (2000 mm3 tumor endpoint)

0 10 20 30 40 500

500

1000

1500

2000

2500

Group 1: Saline Control

Group 2: Cisplatin 2.5 mg/kg (Days 1, 2, 3, 15, 16, & 17)

Days(Day 1 = treatment initiation)

me

an

tu

mo

r v

olu

me

(m

m3;+

/- S

E)

Bladder PDX Models Differential Treatment Responses

26

Model: TM00015 High grade urothelial carcinoma in bladder

(invasive)

In Vivo Pharmacology Services |

• Tumor growth rates vary

• Response varies

TM00015-P2 PDX Tumor Response to Cisplatin Treatment

Page 27: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

PDX ModelsPlatform to test heterogeneity of tumor response

27In Vivo Pharmacology Services |

Page 28: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Breast Cancer PDXNSGTM support growth of ER+ breast tumors

28In Vivo Pharmacology Services |

TM00386-PT

• NSG relatively resistant to estradiol crystal formation in bladder

• Tumors retain “organoid” growth pattern

TM00386 (ER+/PR+/Her2-)

TM00386-P0 TM00386-P1

Page 29: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

PR+ >50% ER+ 100%

Breast Cancer PDXER & PR Expression is retained

29In Vivo Pharmacology Services |

ER+/PR+/Her2-

(Estradiol supplementation)

TM00386-P1 TM00386-P1

Page 30: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

NSCLC AdenocarcinomaDrug Susceptibility Based on Gene Expression

30

Gene

Expression

o KRAS

Gly12Cys

o EGFR wild-

type

o ERCC1low

Drug Prediction

o Resistant to

Erlotinib

o Sensitive to

Cisplatin

In Vivo Pharmacology Services |

TM00186-PT TM00186-P0

TM00186-P1 TM00186-P2

Page 31: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

NSCLC AdenocarcinomaGene Expression Predicts Drug Susceptibility

31In Vivo Pharmacology Services |

Gene

Expression

o KRAS

Gly12Cys

o EGFR wild-

type

o ERCC1low

Drug Prediction

o Resistant to

Erlotinib

o Sensitive to

Cisplatin

Page 32: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Lung Adenocarcinoma EGFR L858R Acquired TKI Resistance (TM00199)

32In Vivo Pharmacology Services |

Page 33: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Lung Adenocarcinoma EGFR L858RPDX Tumor Models Patient Response – TM00199

33In Vivo Pharmacology Services |

Page 34: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

34In Vivo Pharmacology Services |

huCD34+ HSCNSG™

PDX Tumor or Cell Line

Irradiation

Humanized NSG™

Humanized NSG™ with Tumor (When tumors reach 70-120 mm3 mice are treated

with therapeutics for 21 to 28 days)

Onco-Hu™

Humanized Tumor-Bearing NSG™ and NSG-SGM3™ Mice

NSG (005557)NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ

NSG-SGM3 (013062)NOD.Cg-Prkdcscid Il2rgtm1Wjl

Tg(CMV-IL3,CSF2,KITLG)1Eav/MloySzJ

Page 35: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

39In Vivo Pharmacology Services |

Growth Kinetics of PDX Tumors in Hu-NSG™

PDX engrafted 12 weeks post CD34+ humanization, HuCD45+ greater than 20%

HLA mismatches (partial or full) may be tolerated

PDX growth kinetics should be tested for each

model before enrolling in a study

Due to variability in coengraftment and

therapeutic response, several CD34+ donors per experiment should be considered

Wang et al., 2018 FASEB PMID: 29146734

BR0744 Breast

LG0977 Lung

SA0209 Soft Tissue Carcinoma

Comparison of growth rate of PDX Tumors in NSG™ vs. Hu-NSG™

Page 36: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Keytruda and Cisplatin Inhibit Growth of

the TM00098 PDX Model in Hu-CD34

NSG™ PDX Mice

36

• Fresh tumor tissue engraftment• Hu-CD45+ in Hu-NSG™ mice:

>25% • BR1126 PD-L1 surface

expression: 56.9%

In Vivo Pharmacology Services |

Page 37: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Which model(s) could be useful for

cancer immunotherapy?

C57BL/6J mouse + syngeneic cancer cell line (B16-

F10)

Nude mouse + PDX + human hematopoietic stem cells

NSG mouse + PDX

NSG mouse + PDX + human hematopoietic stem cells

37

Page 38: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

MGI: The Ultimate Laboratory

Mouse Resource

38

www.informatics.jax.org

In Vivo Pharmacology Services |

Page 39: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Mouse Tumor DatabasePDX Model Resource

39

www.tumor.informatics.jax.org/mtbwi/index.do

In Vivo Pharmacology Services |

Search by:

o Tumor ID

o Primary tumor site

o Diagnosis

o Gene variant

Page 40: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

40In Vivo Pharmacology Services |

MTB: PDX Model Resource

Page 41: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

41In Vivo Pharmacology Services |

MTB: PDX Model ResourcePDX Model Details model ID=TM00096

Page 42: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

PDX Gene Expression Profile

42In Vivo Pharmacology Services |

PDX Model Details model ID=TM00096

Page 43: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Tumor Growth Characteristics

43In Vivo Pharmacology Services |

PDX Model Details model ID=TM00096

Page 44: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

44In Vivo Pharmacology Services |

CKB molecular profile pages

MTB: Variant Summary and Clinical

Knowledgebase (CKB)

PDX Model Details model ID=TM00096

Page 45: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

CKB: Molecular Profile

45

Page 46: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

PDX Program Summary

46

PDX models more closely represent clinical

observations than previous models

o Gene expression, tumor structure, and treatment response

o Low-passage samples retain heterogeneity and fidelity of

human cancers

Data is available to guide model selection

Ability to pair with humanized mice for immuno-

oncology applications

In Vivo Pharmacology Services |

Page 47: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

47

Humanized Mice, Patient-Derived Xenograft

Preclinical Models and Therapeutic Drug

Evaluation

CRISPR/Cas9 Mouse Model Generation

Common Inbred and Specialty JAX™ Mice

Aged C57BL/6J Mice (25-78 wks)

Inbred, Outbred and B6J Nude Mice

Mouse Genome Scanning

NSG™ & NRG Mouse Model Variants

Syngeneic Mice Studies for Cancer

Research (i.e., Allograft Mouse Tumor

Studies)

Mouse Cryopreservation and Recovery

Basic and Complex Mouse Breeding,

Speed Congenics, and Rederivation

Neurobiology Models and Resources

JAX™ Mice & Services: Leading Experts in Mouse Modeling

Page 48: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want
Page 49: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Upcoming JAX™ Webinars

Rapid in Vivo Evaluation of Immunomodulatory Therapies Using Hu-

PBMC NSG™ Mice

o April 16, 2020, 4:00 PM Central European Time

Onco-Hu™ Models: Humanized Mice for Evaluation of Immuno-

Oncology Therapeutics

o April 30, 2020, 1:00 PM USA Eastern Standard Time

www.jax.org/education-and-learning/webinars |

Subscribe to the monthly webinar announcements email list:

https://subscribe.jax.org/

49

Page 50: Predictive Cancer Models Using Patient-Derived Xenograft ......derived xenograft (PDX) models in your research? Yes No, but I am planning to within the next 6 months No, but I want

Thank you!

We will now begin our live

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Send any unanswered and future

questions to [email protected]

Please help us improve by completing

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