1
Rationale for Targeting SEMA4D Anti-SEMA4D Preclinical Tumor Model Data – MAb 67-1 Abstract (Number 128851) Phase 1 Study of VX15/2503, a humanized IgG4 anti-SEMA4D antibody, in advanced cancer patients (pts) Drew Warren Rasco, Ramesh K. Ramanathan, Amita Patnaik, Glen J. Weiss, Valerie Iddison, Cynthia Edington, Terrence L Fisher, Danielle Mutz, Lisa Blaydorn, Anthony W. Tolcher, John E. Leonard ; South Texas Accelerated Research Therapeutics (START) Center for Cancer Care, San Antonio, TX; Virginia G. Piper Cancer Center at Scottsdale Healthcare/TGen, Scottsdale, AZ; Vaccinex, Inc, Rochester, NY www.vaccinex.com Background : Semaphorin 4D (SEMA4D) regulates cellular adhesion, motility and activation of cells of the nervous, vascular and immune systems; it also promotes tumor progression and metastasis. SEMA4D and its receptor plexin B1 are widely expressed in human tumors; the interaction of plexin B1 with MET & ERBB2 leads to SEMA4D-mediated transactivation of these membrane receptor kinases promoting tumor cell migration and invasive growth. The murine progenitor of VX15/2503 suppressed tumor growth in syngeneic and transgenic tumors. No toxicologic effects were noted in studies of VX15/2503 using rats and primates and PK/PD profiles were generally predictive of data from clinical trial subjects. Methods : A multiple ascending dose trial was initiated in adult pts with advanced refractory solid tumors; pts were administered weekly IV doses of VX15/2503 until progression. Dose levels were 0.3 to 20 mg/kg. Tumors were assessed by RECIST 1.1 after each 8 dose cycle. Biomarkers assessed were SEMA4D, VEGF, HGF, PLGF and MET. Results : Enrollment has been concluded (n=42 Pts); sex 40.5%M/59.5%F. Mean age (yrs) 64.8; ECOG 0/1/2 are 28.6% /69%/2.4%. No MTD was found. One DLT (grade 3 GGT elevation; 15 mg/kg) was reported in a pancreatic cancer pt with disease progression. As of 12/16/2013 the most frequent treatment-related AE’s (n=42 pts) included grade 1/2 nausea (19.0%), arthralgia (11.9%), decreased appetite (11.9%), and fatigue (11.9%); 15 drug unrelated SAE’s were reported in 11 pts. No CR/PR were observed. Thirteen of 42 pts at all dose levels exhibited stable disease for at least 8 weeks. Pts with the longest duration of treatment included: 48-55 weeks (colorectal; 9 mg/kg) (breast; 15 mg/kg) (papillary thyroid; 20 mg/kg); these pts had relatively high T or B cell levels. VX15/2503 serum concentrations of ≥ 0.3 µg/mL produced complete T cell SEMA4D saturation. HAHA responses (titer > 100) with possible effects on PK were observed in 4 of 41 pts (10%); in only 1 pt (2%) was an effect of HAHA on PD observed. VX15/2503 half-life was roughly 4-5 days at doses ≥1.0 mg/kg. Conclusion: VX15/2503 was well tolerated at dose levels up to 20 mg/kg, with 450 doses administered to 42 pts. Future studies will be combination trials in selected tumor types. ClinicalTrials.gov identifier NCT01313065 SEMA4D Expressed on T & B lymphocytes, monocytes and dendritic cells Exists as cell-surface homodimer and soluble forms; both are active Binds to PLXNB1 (high affinity); PLXNB2 (intermediate affinity); CD72 (low affinity) Binding to PLXNB1 transactivates MET and ErbB2, stimulating invasive growth SEMA4D overexpressed in human tumors including breast, pancreatic, colon, ovarian, urogenital and sarcoma SEMA4D appears to regulate balance and localization of inflammatory M1 and tolerance-inducing M2 macrophages (MΦ) in tumor stroma; stimulates recruitment and activity of cytotoxic CD8+ T lymphocytes into stroma VX15/2503, a humanized, IgG4 anti-human SEMA4D antibody Neutralizes both cellular and soluble forms of SEMA4D Blocks binding of human SEMA4D to its receptors Affinity for native human T cell SEMA4D is roughly 0.4 nM (Scatchard) Following binding to cellular SEMA4D roughly 60% of the antibody-antigen complex is internalized 60x Frequency of Treatment-Related AE’s Reported in Two or more Pts Patient Time on Study Profile – VX15/2503 Study Design: Nonrandomized, open-label, multiple dose, dose escalation study in patients with advanced solid tumor disease Standard 3 + 3 dose escalation Dose levels: 0.3, 1, 3, 6, 9, 15 and 20 mg/kg; weekly IV; expansion cohort (8 patients) treated at 20 mg/kg DLT defined as an adverse event during cycle 1 not definitely related to the underlying disease; NCI CTCAE, v4.03 Study Objectives: Primary - Safety and tolerability of VX15/2503 weekly IV infusion; Determine MTD Secondary - Evaluate PK Exploratory Objectives Evaluate PD (T cell SEMA4D; soluble SEMA4D); Immunogenicity Explore anti-tumor activity of IV infusions of VX15/2503 Serum VEGF, HGF, PLGF, and MET Levels Main Inclusion Criteria: Adult patients with confirmed advanced tumor disease, relapsed or refractory to SOC Measureable disease by RECIST 1.1 Life expectancy of ≥ 3 months; ECOG score 0-2; Adequate marrow, renal and liver function Patient Demographics Safety – VX15/2503 VX15/2503 Phase 1 Study Design, Objectives and Eligibility Conclusions – VX15/2503 VX15/2503 was well tolerated when administered as a weekly infusion at doses up to and including 20 mg/kg; no MTD was determined 459 doses administered to 42 patients; one DLT occurred at 15 mg/kg Immunogenicity reduced exposure in some patients, primarily at dose levels of 3 mg/kg and below Five patients (Cohorts 4 – 7) with SD for ≥ 15 weeks had relatively elevated T or B cell levels at enrollment Best overall response: 1 PR; 1.5 cm hilar LN decreased to 0.8 cm; cycle 2 through EOT; papillary thyroid; cohort 7 (20 mg/kg) (ORR 2.4%) Future trials of VX15/2503 will be combination studies in selected tumor types In vivo neutralization of SEMA4D by anti-SEMA4D allowed migration of MΦ and CD8 + T cells into tumor 1 DLT: Gr3 GGT elevation in a patient with pancreatic cancer concomitant with progressive disease in Cohort 6 (15mg/kg; 3 doses); exited study after completing F/U 7 deaths in Safety Population; all due to disease progression 15 SAEs in 12 patients, all assessed as UNRELATED to study drug 342 Treatment-Emergent AE’s – no apparent trends observed TEAEs by CTCAE Grade: 89% Grade 1/2; 9% Grade 3/4; 1.5% Grade 5 Discontinuations - Six patients stopped treatment due to AE; Cohorts: 1 (1 pt); 6 (1 pt); 7/8 (4 pts) Pharmacokinetic/Pharmacodynamic Data – VX15/2503 0 8 16 24 32 40 48 56 Breast (1,*) Leiomyosarcoma (1,*) Transitional Cell (1,*) Hepatocellular (1,*) Colorectal (4,*) Colon (1,*) Colon (4,*) Colorectal (1) Colon (1) Pancreatic (1) Squamous Cell Lung (3) Gastroesophageal (1) Colon (1) Adenocarinoma (2) Pancreatic (1) Colon (1) Prostate (1) Unknown Primary (1) Adenocarinoma (1) Intrahepatic carcinoma (1) Pancreatic Breast (1) Colon (4) Colon (1) Ovarian (1) Colon (1) Colon (4) Pancreatic (1) Lung (1) Thyroid (4) Colon (1) Breast (1) Leiomyosarcoma uterine (1) Colon (1) Leiomyosarcoma lung (1) Leiomyosarcoma retroperitoneal (1) PNET (1) Rectal (1) Unknown Primary (1) Breast (1) Breast (1) Endometrial Stromal Sarcoma (1) Weeks on Study (1) - Disease Progression; (2) - Patient Withdrawal; (3) – Death; (4) - Physician Decision; PR – Partial Response * includes sentinel dose, Expansion 20 mg/kg 20 mg/kg 15 mg/kg 9 mg/kg 6 mg/kg 3 mg/kg 1 mg/kg 0.3 mg/kg DLT PR Control Ig Anti-SEMA4D Cytokine Secretion: CD45+ Tumor Infiltrating Lymphocytes (TIL) Frequency of Tumor-Specific CD8+ T Cells SEMA4D CD8 Patients Treated N = 42 (8 in Expansion Cohort) Total No Infusions 459 (Range = 1 to 54) Mean Age, Yrs 64.8 Gender N (%) F: 25 (60%) M: 17 (40%) Tumor Types (N) Colon; Rectal (14) Breast (5) Pancreatic (4) Adenocarcinoma Unknown Origin (4) Leiomyosarcoma (4) Lung (2) Gstroesopageal (1) Hepatocellular (1) Intrahepatic Cholangiocarcinoma (1) Ovarian (1) Prostate (1) Thyroid (1) Transitional Cell Ureter (1) PNET (1) Endometrial Stromal Sarcoma (1) VX15/2503 half-life was roughly 4 days from 1 mg/kg dose level through 20 mg/kg C max increased with dose level from 3 μg/mL at 0.3 mg/kg to 286 μg/mL at 15 mg/kg; C max at 20 mg/kg was similar to that at 15 mg/kg AUC 0-ranged from 123 μg/mL· Hr at 0.3 mg/kg to 20,507 µg/mL· Hr at 15 mg/kg; AUC at 20 mg/kg was similar NB: Values from non-compartmental analysis of data from first dose; only a limited sampling of patients in each dose cohort occurred Adverse Event 0.3 mg/kg N= 4 1.0 mg/kg N= 4 3.0 mg/kg N= 3 6.0 mg/kg N= 4 9.0 mg/kg N= 4 15.0 mg/kg N= 8 20.0 mg/kg N=15 Total N = 42 Nausea 1 (25%) 1 (25%) 4 (26.7%) 6 (14.3%) Fatigue 1 (25%) 1 (25%) 1 (25%) 2 (13.3%) 5 (11.9%) Arthralgia 1 (25%) 2 (25%) 3 (7.1%) Decreased Appetite 1 (25%) 1 (33.3%) 1 (12.5%) 3 (7.1%) Infusion Related Reaction 1 (25%) 1 (12.5%) 1 (6.7%) 3 (7.1%) Pyrexia 1 (25%) 2 (13.3%) 3 (7.1%) Anti-SEMA4D antibody improves anti-tumor effects of anti-CTLA-4 and cyclophosphamide in Colon26

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Page 1: Phase 1 Study of VX15/2503, a humanized IgG4 anti ...vaccinex.com/wp/wp-content/uploads/2015/02/ASCO2014.pdfFuture trials of VX15/2503 will be combination studies in selected tumor

Rationale for Targeting SEMA4D

Anti-SEMA4D Preclinical Tumor Model Data ndash MAb 67-1

Abstract (Number 128851)

Phase 1 Study of VX152503 a humanized IgG4 anti-SEMA4D antibody in advanced cancer patients (pts) Drew Warren Rasco Ramesh K Ramanathan Amita Patnaik Glen J Weiss Valerie Iddison Cynthia Edington Terrence L Fisher Danielle Mutz Lisa Blaydorn Anthony W Tolcher John E Leonard South Texas Accelerated Research Therapeutics (START) Center

for Cancer Care San Antonio TX Virginia G Piper Cancer Center at Scottsdale HealthcareTGen Scottsdale AZ Vaccinex Inc Rochester NY wwwvaccinexcom

Background Semaphorin 4D (SEMA4D) regulates cellular adhesion motility and activation of cells of the nervous vascular and immune systems it also promotes tumor progression and metastasis SEMA4D and its receptor plexin B1 are widely expressed in human tumors the interaction of plexin B1 with MET amp ERBB2 leads to SEMA4D-mediated transactivation of these membrane receptor kinases promoting tumor cell migration and invasive growth The murine progenitor of VX152503 suppressed tumor growth in syngeneic and transgenic tumors No toxicologic effects were noted in studies of VX152503 using rats and primates and PKPD profiles were generally predictive of data from clinical trial subjects Methods A multiple ascending dose trial was initiated in adult pts with advanced refractory solid tumors pts were administered weekly IV doses of VX152503 until progression Dose levels were 03 to 20 mgkg Tumors were assessed by RECIST 11 after each 8 dose cycle Biomarkers assessed were SEMA4D VEGF HGF PLGF and MET Results Enrollment has been concluded (n=42 Pts) sex 405M595F Mean age (yrs) 648 ECOG 012 are 286 6924 No MTD was found One DLT (grade 3 GGT elevation 15 mgkg) was reported in a pancreatic cancer pt with disease progression As of 12162013 the most frequent treatment-related AErsquos (n=42 pts) included grade 12 nausea (190) arthralgia (119) decreased appetite (119) and fatigue (119) 15 drug unrelated SAErsquos were reported in 11 pts No CRPR were observed Thirteen of 42 pts at all dose levels exhibited stable disease for at least 8 weeks Pts with the longest duration of treatment included 48-55 weeks (colorectal 9 mgkg) (breast 15 mgkg) (papillary thyroid 20 mgkg) these pts had relatively high T or B cell levels VX152503 serum concentrations of ge 03 microgmL produced complete T cell SEMA4D saturation HAHA responses (titer gt 100) with possible effects on PK were observed in 4 of 41 pts (10) in only 1 pt (2) was an effect of HAHA on PD observed VX152503 half-life was roughly 4-5 days at doses ge10 mgkg Conclusion VX152503 was well tolerated at dose levels up to 20 mgkg with 450 doses administered to 42 pts Future studies will be combination trials in selected tumor types ClinicalTrialsgov identifier NCT01313065

SEMA4D Expressed on T amp B lymphocytes monocytes and dendritic cells Exists as cell-surface homodimer and soluble forms both are active Binds to PLXNB1 (high affinity) PLXNB2 (intermediate affinity) CD72 (low affinity) Binding to PLXNB1 transactivates MET and ErbB2 stimulating invasive growth SEMA4D overexpressed in human tumors including breast pancreatic colon ovarian urogenital and sarcoma SEMA4D appears to regulate balance and localization of inflammatory M1 and tolerance-inducing M2 macrophages (MΦ) in tumor stroma stimulates recruitment and activity of cytotoxic CD8+ T lymphocytes into stroma

VX152503 a humanized IgG4 anti-human SEMA4D antibody Neutralizes both cellular and soluble forms of SEMA4D Blocks binding of human SEMA4D to its receptors Affinity for native human T cell SEMA4D is roughly 04 nM (Scatchard) Following binding to cellular SEMA4D roughly 60 of the antibody-antigen complex is internalized

60x

Frequency of Treatment-Related AErsquos Reported in Two or more Pts

Patient Time on Study Profile ndash VX152503

Study Design Nonrandomized open-label multiple dose dose escalation study in patients with advanced solid tumor disease Standard 3 + 3 dose escalation Dose levels 03 1 3 6 9 15 and 20 mgkg weekly IV expansion cohort (8 patients) treated at 20 mgkg DLT defined as an adverse event during cycle 1 not definitely related to the underlying disease NCI CTCAE v403

Study Objectives Primary - Safety and tolerability of VX152503 weekly IV infusion Determine MTD Secondary - Evaluate PK Exploratory Objectives Evaluate PD (T cell SEMA4D soluble SEMA4D) Immunogenicity Explore anti-tumor activity of IV infusions of VX152503 Serum VEGF HGF PLGF and MET Levels

Main Inclusion Criteria Adult patients with confirmed advanced tumor disease relapsed or refractory to SOC Measureable disease by RECIST 11 Life expectancy of ge 3 months ECOG score 0-2 Adequate marrow renal and liver function

Patient Demographics

Safety ndash VX152503

VX152503 Phase 1 Study Design Objectives and Eligibility

Conclusions ndash VX152503 VX152503 was well tolerated when administered as a weekly infusion at doses up to and including 20 mgkg no MTD was determined 459 doses administered to 42 patients one DLT occurred at 15 mgkg Immunogenicity reduced exposure in some patients primarily at dose levels of 3 mgkg and below Five patients (Cohorts 4 ndash 7) with SD for ge 15 weeks had relatively elevated T or B cell levels at enrollment Best overall response 1 PR 15 cm hilar LN decreased to 08 cm cycle 2 through EOT papillary thyroid cohort 7 (20 mgkg) (ORR 24) Future trials of VX152503 will be combination studies in selected tumor types

In vivo neutralization of SEMA4D by anti-SEMA4D allowed migration of MΦ and CD8+ T cells into tumor

1 DLT Gr3 GGT elevation in a patient with pancreatic cancer concomitant with progressive disease in Cohort 6 (15mgkg 3 doses) exited study after completing FU

7 deaths in Safety Population all due to disease progression 15 SAEs in 12 patients all assessed as UNRELATED to study drug 342 Treatment-Emergent AErsquos ndash no apparent trends observed TEAEs by CTCAE Grade 89 Grade 12 9 Grade 34 15 Grade 5 Discontinuations - Six patients stopped treatment due to AE Cohorts 1 (1 pt) 6 (1 pt) 78 (4 pts)

PharmacokineticPharmacodynamic Data ndash VX152503

0 8 16 24 32 40 48 56

Breast (1) Leiomyosarcoma (1) Transitional Cell (1)

Hepatocellular (1) Colorectal (4)

Colon (1) Colon (4)

Colorectal (1) Colon (1)

Pancreatic (1) Squamous Cell Lung (3)

Gastroesophageal (1) Colon (1)

Adenocarinoma (2) Pancreatic (1)

Colon (1) Prostate (1)

Unknown Primary (1) Adenocarinoma (1)

Intrahepatic carcinoma (1) Pancreatic Breast (1) Colon (4) Colon (1)

Ovarian (1) Colon (1) Colon (4)

Pancreatic (1) Lung (1)

Thyroid (4) Colon (1)

Breast (1) Leiomyosarcoma uterine (1)

Colon (1) Leiomyosarcoma lung (1)

Leiomyosarcoma retroperitoneal (1) PNET (1) Rectal (1)

Unknown Primary (1) Breast (1) Breast (1)

Endometrial Stromal Sarcoma (1)

Weeks on Study (1) - Disease Progression (2) - Patient Withdrawal (3) ndash Death (4) - Physician Decision PR ndash Partial Response includes sentinel dose

Expansion 20 mgkg 20 mgkg 15 mgkg 9 mgkg 6 mgkg 3 mgkg 1 mgkg 03 mgkg

DLT

PR

Control Ig Anti-SEMA4D

Cytokine Secretion CD45+ Tumor Infiltrating Lymphocytes (TIL) Frequency of Tumor-Specific CD8+ T Cells

SEMA4D

CD8

Patients Treated N = 42 (8 in Expansion Cohort)

Total No Infusions 459 (Range = 1 to 54)

Mean Age Yrs 648

Gender N ()

F 25 (60) M 17 (40)

Tumor Types

(N)

Colon Rectal (14) Breast (5)

Pancreatic (4) Adenocarcinoma Unknown Origin (4)

Leiomyosarcoma (4) Lung (2)

Gstroesopageal (1) Hepatocellular (1)

Intrahepatic Cholangiocarcinoma (1) Ovarian (1) Prostate (1) Thyroid (1)

Transitional Cell Ureter (1) PNET (1)

Endometrial Stromal Sarcoma (1)

VX152503 half-life was roughly 4 days from 1 mgkg dose level through 20 mgkg Cmax increased with dose level from 3 microgmL at 03 mgkg to 286 microgmL at 15 mgkg

Cmax at 20 mgkg was similar to that at 15 mgkg AUC 0-infin ranged from 123 microgmL Hr at 03 mgkg to 20507 microgmL Hr at 15 mgkg

AUC at 20 mgkg was similar NB Values from non-compartmental analysis of data from first dose only a limited sampling of patients in each dose cohort occurred

Adverse Event

03 mgkg N= 4

10 mgkg N= 4

30 mgkg N= 3

60 mgkg N= 4

90 mgkg N= 4

150 mgkg N= 8

200 mgkg

N=15

Total

N = 42

Nausea 1 (25) 1 (25) 4 (267) 6 (143)

Fatigue 1 (25) 1 (25) 1 (25) 2 (133) 5 (119)

Arthralgia 1 (25) 2 (25) 3 (71)

Decreased Appetite 1 (25) 1 (333) 1 (125) 3 (71)

Infusion Related Reaction

1 (25) 1 (125)

1 (67)

3 (71)

Pyrexia 1 (25) 2 (133) 3 (71)

Anti-SEMA4D antibody improves anti-tumor effects of anti-CTLA-4 and cyclophosphamide in Colon26

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