Embed Size (px)
Citation preview
NGIC and BINAsia
Jong Bhak
NGICKRIBBKorea
Acknowledgment
• APCTT• Biotec• Participants from Asian Countries• Organizing staff• MOSTfor support
NGIC ChronicleNGIC Chronicle NGIC ChronicleNGIC Chronicle
2001. 04 : National Genome Information Center Proposed 2001. 07 : Detailed Establishment plan 2001. 10 : NGIC Launched 2003. 08 : Designated focal point for research data deposition 2004. 01 : Initiation of BioInformation Portal Service 2005. 03 : Data analysis system launched 2005. 08 : National BioInformation Center Proposed 2005. 12 : Detailed Establishment plan 2006. 02 : (Konbic) Korea National BioInformation Center 2006. 02 : (Konbic) Korea National BioInformation Center to be launchedto be launched
2001. 04 : National Genome Information Center Proposed 2001. 07 : Detailed Establishment plan 2001. 10 : NGIC Launched 2003. 08 : Designated focal point for research data deposition 2004. 01 : Initiation of BioInformation Portal Service 2005. 03 : Data analysis system launched 2005. 08 : National BioInformation Center Proposed 2005. 12 : Detailed Establishment plan 2006. 02 : (Konbic) Korea National BioInformation Center 2006. 02 : (Konbic) Korea National BioInformation Center to be launchedto be launched
NGIC HistoryNGIC HistoryNGIC HistoryNGIC History
20032003 20042004 20052005 20062006
3333 명명4141 명명
5555 명명
연구비연구비
3,754
연구비단위 : 백만원
인원인원
Xeon LinuxXeon Linuxclustercluster
Sun serverSun server
StorageStorage
Origin3400Origin3400
PCPC 급 서버 급 서버 77 대대
Xeon LinuxXeon Linuxclustercluster
Sun serverSun server
StorageStorage
Opteron LinuxOpteron Linuxclustercluster
PCPC 급 서버 급 서버 1515 대대
Compaq serverCompaq server
1,997
Sun serverSun server
Origin3400Origin3400
PCPC 급 서버 급 서버 33 대대
Opteron ClusterOpteron Cluster 급 급 22 대 도입예정대 도입예정
PCPC 용 서버 용 서버 2020 대 운영대 운영
장비운영현황장비운영현황
Xeon LinuxXeon Linuxclustercluster
Sun serverSun server
StorageStorage
Opteron LinuxOpteron Linuxclustercluster
약 약 4,000 4,000 이상이상
3,504
약 약 6060 명명
NGIC presentNGIC present NGIC presentNGIC present
KISTIKISTIKISTIKISTI
NGICNGICProteomicsProteomicsFrontierFrontier
ProteomicsProteomicsFrontierFrontier
HumanHumanGenomeGenomeFrontierFrontier
HumanHumanGenomeGenomeFrontierFrontier
MicrobialMicrobialGenomesGenomes
MicrobialMicrobialGenomesGenomes
KNIHKNIHKNIHKNIH
PlantPlantResourceResourceFrontierFrontier
PlantPlantResourceResourceFrontierFrontier
AgricultureAgricultureResearchResearchCentersCenters
AgricultureAgricultureResearchResearchCentersCenters
CattleCattleResearchResearchCentersCenters
CattleCattleResearchResearchCentersCenters
CropCropPlantPlant
FrontierFrontier
CropCropPlantPlant
FrontierFrontier
ETRIETRIETRIETRI
Large-Large-scalescaleDataDataGRIDGRID
ApplicationApplicationGRIDGRID
Operation network of NGIC
Genome Transcript Interactome FunctomeProteome Textome
Sequence
Structure
Expression
Pathway
Regulation
Network
Info TypeInfo TypeInfo TypeInfo Type
OmeOmeOmeOme
file
분석Pipeline
BioEngine DB
분석
BioDiversityMaterials Bank
자원
자원자원
BioBioResourceResource
2ndary Info2ndary Info2ndary Info2ndary Info 2ndary DB2ndary DB2ndary DB2ndary DB
BioBioMatrixMatrix
BioBioMatrixMatrix
Automatic BioInformation Pipeline Processing System
BioBioEngineEngine
IEAIEA
……..
HapMapHapMap
FESDFESD
PEIORFPEIORF
SNPSNP
CompCompGenomeGenome
BioPortalBioPortalBioPortalBioPortal
BioWikiBioWikiBioWikiBioWiki
진핵진핵유전체유전체
SiRNASiRNA
TF TF ExplorerExplorer
ActiveActivePromoterPromoter
RepeatomeRepeatome
GS2PATHGS2PATH
SIGPSIGP
BiozineBiozineBiozineBiozine
BioBioJournalJournal
BioBioJournalJournal
KUGIKUGI
SAGEDSAGED
NormPipeNormPipe
ArrayPortArrayPort
. . .. . .
Gene setGene setAnalyzeAnalyze
……
PSIMAPPSIMAP
……
PDSPDS
LoCalodomLoCalodom
StrokeStroke
TextomeTextome
BioEngineBioEngine
ProteinProteinStructureStructure
ProteinProteinInteractionInteraction
GeneGeneRegulationRegulation
CancerCancerMicroarrayMicroarray
ChemicalChemicalGenomicsGenomics
siRNAsiRNABiomarkerBiomarker
SOLSOL
StrokeStroke
SNPSNP
ChimpanzeeChimpanzee
Biological DB Bioinformatic Tool BioPipeline 2ndary DBs Inhouse Bio Tool
BinAsia as I see
• 1st stage: Biotechnology Introduction Network for Asia
• 2nd stage: Bio Information Net for Asia– Information Infrastructure– Information experts and staff– IT hardware infra– Virtual network interfaced with web.– Regular meetings by focal nodes and
focal node technicians
Practicals of BinAsia
• Establishment of working BioInformation Net• BioTechnology List for local nodes
– Agricultural BT• Biofertilizer, BioIndicator, Bioremediation• Biopesticides Biogas
– Commercialization of local knowledge– Training program in BioInformation Handling– Language issues Inglish ?
Todos– Establishing working National nodes for BinAsia– Establishing working a central information node– Integrated BioInfo DBs for local nodes– Basic information gathering by local and central node– Value-added information generation & dissemination– Analysis of Asian BT and BioInfoTech– Next meeting in Thailand?– Adjusting BINAsia funding and operation.– License issues http://biolicense.org/
Basic Info. Gathering
• Traditional knowledge in BT• Statistics on BT (industry and schools)• Bit BT projects
– Shrimp genome– Casava genome project
• Translating local language to English
Future
• Asian Biotechnology Information Network Virtual Regional Center
• In workin with other Asian BioInformation Centers– AMBL– eIMBL– Counterpart to EBI
• BT info. network for AU (Asian Union?)
Virtual Bioinformatics Center
•http://vbio.org/
CJK bioinformatics Training course
• 5th CJK bioinformatics training course• Expansion of Training and Teaching program
– http://biomoodle.net/
Proposed Role of NGIC for BINasia
• NGIC collects biotechnology DBs, information servers, tools and education materials
• NGIC serves a fast website for managing the above function.
• NGIC mirrors binasia.net site for backup.• NGIC represents Korean node of BINasia• NGIC supports BINasia meetings and admini
stration
ASEAN and NGIC
• ASEAN + Korea bioinformatics network• From year 2007, NGIC is likely to get more f
unding for international project such as BINAsia.
