Morphometry BIRN Tool Dissemination

  • View
    45

  • Download
    0

Embed Size (px)

DESCRIPTION

Morphometry BIRN Tool Dissemination. Morphometry BIRN: Tool Dissemination. Recommendation for MRI acquisition protocols Software Processing and Visualization Tools MRI data Tutorials. Domains for public dissemination. Morphometry BIRN: Tool Dissemination. - PowerPoint PPT Presentation

Text of Morphometry BIRN Tool Dissemination

  • Morphometry BIRN: Tool DisseminationRecommendation for MRI acquisition protocols

    Software Processing and Visualization Tools

    MRI data

    TutorialsDomains for public dissemination

  • Morphometry BIRN: Tool DisseminationRecommendation for MRI acquisition protocolsScanner Upgrade Calibration Protocol: http://www.na-mic.org/Wiki/index.php/MGH-BWH_Mini-BIRN_Standard_Upgrade_Protocol GE/Siemens diffusion MRI acquisition with phase maps

    Software Processing and Visualization Tools: Gradient non-linearities distortion correction codeDistortion correction code for DTI (Bo and eddy currents effects)Tool for de-identifying structural MRI Freesurfer: tool for automated segmentation of neuroanatomical structuresLDMM: tool for shape analysesLONI Pipeline: tool for controlling processing workflows3D Slicer: visualization tool

    MRI data: Open Access Structural Imaging SeriesMulti-site mBIRN calibration study (5 subjects, 5 sites, 2 visits)DTI calibration data (2 subjects scanned multiple times)

    Tutorials:3D Slicer and Freesufer (Thu Oct 20)

  • Morphometry BIRN: Tool DisseminationRecommendation for MRI acquisition protocolsScanner Upgrade Calibration Protocol: http://www.na-mic.org/Wiki/index.php/MGH-BWH_Mini-BIRN_Standard_Upgrade_Protocol GE/Siemens diffusion MRI acquisition with phase maps

    Software Processing and Visualization ToolsGradient non-linearities distortion correction codeDistortion correction code for DTI (Bo and eddy currents effects)Tool for de-identifying structural MRI Freesurfer: tool for automated segmentation of neuroanatomical structuresLDMM: tool for shape analysesLONI Pipeline: tool for controlling processing workflows3D Slicer: visualization tool

    MRI data: Open Access Structural Imaging SeriesMulti-site mBIRN calibration study (5 subjects, 5 sites, 2 visits)DTI calibration data (2 subjects scanned multiple times)

    Tutorials:3D Slicer and Freesufer (Thu Oct 20)

  • Morphometry BIRN: gradient unwarping codeUncorrected ImagesCorrected ImagesSiemens Sonata(1.5T)Siemens AC88(7T)

  • Morphometry BIRN: Tool DisseminationRecommendation for MRI acquisition protocolsScanner Upgrade Calibration Protocol: http://www.na-mic.org/Wiki/index.php/MGH-BWH_Mini-BIRN_Standard_Upgrade_Protocol GE/Siemens diffusion MRI acquisition with phase maps

    Software Processing and Visualization Tools Gradient non-linearities distortion correction codeDistortion correction code for DTI (Bo and eddy currents effects)Tool for de-identifying structural MRI Freesurfer: tool for automated segmentation of neuroanatomical structuresLDMM: tool for shape analysesLONI Pipeline: tool for controlling processing workflows3D Slicer: visualization tool

    MRI data: Open Access Structural Imaging SeriesMulti-site mBIRN calibration study (5 subjects, 5 sites, 2 visits)DTI calibration data (2 subjects scanned multiple times)

    Tutorials:3D Slicer and Freesufer (Thu Oct 20)

  • Distortion corrections with phase-maps for each diffusion-encoding directionMorphometry BIRN: DTI correction codehttp://wiki.na-mic.org/Wiki/index.php/Mbirn:_B0_and_eddy_current_correction_code_for_diffusion_MRI

  • Morphometry BIRN: Tool DisseminationRecommendation for MRI acquisition protocolsScanner Upgrade Calibration Protocol: http://www.na-mic.org/Wiki/index.php/MGH-BWH_Mini-BIRN_Standard_Upgrade_Protocol GE/Siemens diffusion MRI acquisition with phase maps

    Software Processing and Visualization Tools Gradient non-linearities distortion correction codeDistortion correction code for DTI (Bo and eddy currents effects)Tool for de-identifying structural MRI Freesurfer: tool for automated segmentation of neuroanatomical structuresLDMM: tool for shape analysesLONI Pipeline: tool for controlling processing workflows3D Slicer: visualization tool

    MRI data: Open Access Structural Imaging SeriesMulti-site mBIRN calibration study (5 subjects, 5 sites, 2 visits)DTI calibration data (2 subjects scanned multiple times)

    Tutorials:3D Slicer and Freesufer (Thu Oct 20)

  • Morphometry BIRN: defacing codehttp://wiki.na-mic.org/Wiki/index.php/Mbirn:_Defacer_for_structural_MRI

  • Morphometry BIRN: Tool DisseminationRecommendation for MRI acquisition protocolsScanner Upgrade Calibration Protocol: http://www.na-mic.org/Wiki/index.php/MGH-BWH_Mini-BIRN_Standard_Upgrade_Protocol GE/Siemens diffusion MRI acquisition with phase maps

    Software Processing and Visualization Tools Gradient non-linearities distortion correction codeDistortion correction code for DTI (Bo and eddy currents effects)Tool for de-identifying structural MRI Freesurfer: tool for automated segmentation of neuroanatomical structuresLDMM: tool for shape analysesLONI Pipeline: tool for controlling processing workflows3D Slicer: visualization tool

    MRI data: Open Access Structural Imaging SeriesMulti-site mBIRN calibration study (5 subjects, 5 sites, 2 visits)DTI calibration data (2 subjects scanned multiple times)

    Tutorials:3D Slicer and Freesufer (Thu Oct 20)

  • Morphometry BIRN: supported toolsFreesurfer (MGH) (surfer.nmr.mgh.harvard.edu)3D Slicer (BWH)(www.slicer.org )LDMM JHU(www.cis.jhu.edu/software/ldmm )LONI Pipeline (UCLA)(www.loni.ucla.edu )

  • Morphometry BIRN: Tool DisseminationRecommendation for MRI acquisition protocolsScanner Upgrade Calibration Protocol: http://www.na-mic.org/Wiki/index.php/MGH-BWH_Mini-BIRN_Standard_Upgrade_Protocol GE/Siemens diffusion MRI acquisition with phase maps

    Software Processing and Visualization Tools Gradient non-linearities distortion correction codeDistortion correction code for DTI (Bo and eddy currents effects)Tool for de-identifying structural MRI Freesurfer: tool for automated segmentation of neuroanatomical structuresLDMM: tool for shape analysesLONI Pipeline: tool for controlling processing workflows3D Slicer: visualization tool

    MRI data Open Access Structural Imaging SeriesMulti-site mBIRN calibration study (5 subjects, 5 sites, 2 visits)DTI calibration data (2 subjects scanned multiple times)

    Tutorials:3D Slicer and Freesufer (Thu Oct 20)

  • Open Access Structural Imaging Series project www.oasis-brains.org Rich structural & functional MRI dataset (WashU) Open access user agreement means free & unrestricted use of data Part I (November, 2005): 400 cross-sectional acquisitions across lifespan, including 100 demented individuals Extensions throughout 2006: longitudinal, DTI, fMRI, calibration

  • The OASIS projectData set includes 3-4 raw T1-weighted scan, averaged, atlas- registered, and FSL-segmented.Data can be searched, downloaded, and viewed via the web site.

  • Morphometry BIRN: Tool DisseminationRecommendation for MRI acquisition protocolsScanner Upgrade Calibration Protocol: http://www.na-mic.org/Wiki/index.php/MGH-BWH_Mini-BIRN_Standard_Upgrade_Protocol GE/Siemens diffusion MRI acquisition with phase maps

    Software Processing and Visualization Tools Gradient non-linearities distortion correction codeDistortion correction code for DTI (Bo and eddy currents effects)Tool for de-identifying structural MRI Freesurfer: tool for automated segmentation of neuroanatomical structuresLDMM: tool for shape analysesLONI Pipeline: tool for controlling processing workflows3D Slicer: visualization tool

    MRI data Open Access Structural Imaging SeriesMulti-site mBIRN calibration study (5 subjects, 5 sites, 2 visits)DTI calibration data (2 subjects scanned multiple times)

    Tutorials3D Slicer and Freesufer (Thu Oct 20)