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Micro 204 Innate Lymphocytes & Natural Killer Cells Lewis L. Lanier [email protected]

Micro 204 Innate Lymphocytes & Natural Killer Cellsimmunology.ucsf.edu/sites/immunology.ucsf.edu/files/wysiwyg/Micro... · Micro 204 ! Innate Lymphocytes & Natural Killer Cells" Lewis

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Micro 204 ��� Innate Lymphocytes & Natural Killer Cells

Lewis L. Lanier [email protected]

iNKT cell Innate lymphoid cell

Nature Reviews Immunology April 2009

ILC3

NKR+ ILC, LTi

Common Lymphoid Progenitor

NK cell

ILC2

Id2

IL-15

Innate lymphocyte progenitor?

RORα

RORγt

IL-7

Innate Lymphoid Cells

IL-7

ILC1

IFNγ

IFNγ perforin

IL-17 IL-22

IL-5 IL-13

ILC3

NKR+ ILC, LTi

NK cell

ILC2

Innate Lymphoid Cells

ILC1

IFNγ

IFNγ perforin

IL-17 IL-22

IL-5 IL-13

Viruses Intracellular Bacteria

Helminths Epithelial tissue repair

Extracellular bacteria Lymphoid tissue modeling

Epithelial tissue repair

Natural Killer versus ���“Natural Killer T” (NKT) cells���

���What is the difference?

NKT cells are T cells! rearrange TcR genes,express an invariant αβ-TcR,

and require a thymus for development

NK cells are not T cells!

don’t rearrange TcR genes or express CD3 on the cell surface and do not require a thymus

3rd lineage of lymphocytes Function in innate immunity to protect against viruses,

bacteria, parasites, fungi, & tumors Produce cytokines & kill abnormal cells

Human CD3-,CD56+, (Nkp46+) Mouse CD3-,NKR-P1C+ (aka NK1.1) (NKp46+)

Natural Killer Cells

NK cell-deficient Patient #1 Clinical features -  31 yr old female -  Severe HPV and HSV infections, EBV well-controlled, HCMV-negative

-  HPV-induced vaginal carcinoma

-  Recurrent HSV-induced severe gingivitis

-  Type I diabetes (diagnosis age 11)

Immunological features -  Pan leukopenia; hypocellular bone marrow

-  B subset functionally normal, normal antibody response to tetanus and other antigens, hypergammaglobulinemia

-  T cell subset normal, high CTL cytotoxicity

Lack of NK cells peripheral and tissue (bone marrow & vulvar

biopsy)

0 102

103

104

105

<Pacific Blue-A>: CD3

0

103

104

105

<P

E-A

>: C

D56

5.84

11.9

0 102

103

104

105

<Pacific Blue-A>: CD3

0

103

104

105

<P

E-A

>: C

D56

16.6

2.22

0 102

103

104

105

<Pacific Blue-A>: CD3

0

103

104

105

<A

PC

-A>

: C

D19 9.9

0 102

103

104

105

<Pacific Blue-A>: CD3

0

103

104

105

<A

PC

-A>

: C

D19 4.03

CD

56

CD

19

CD3

CD3-CD19+ B cells

CD3-CD56+ NK cells CD3+CD56+ T cells

CD3

NK-deficient patient #1 Healthy donor

•  31 year-old male

•  Unusual clinical history of infections –  Sinusitis, cellulitis, folliculitis, boils, warts (HPV)

•  Leukopenia, hypocellular bone marrow

•  Ankylosing spondylitis (HLA-B27)

NK cell-deficient Patient #2

NK-deficient patient #2

CD3-CD56+ NK cells

CD3+CD56+ T cells

Exome sequencing reveals point mutation in��� zinc-finger of GATA-2 in NK-deficient patients���

���Father of patient #1 had ���

bone marrow transplant early in life��� ���

– buccal swap reveals same GATA-2 mutation ���- therefore dominant mutation

GATA-2

•  Zinc-finger domain containing transcription factor family

•  GATA family regulates hematopoietic gene expression

GATA-1: erythropoiesis

GATA-2: hematopoietic progenitors

GATA-3: T cells, NK cells

•  Gata2-/- or Gata1-/- are embryonic lethal (~day 9.5 due to erythropoietic & hematopoietic defects)

Zn fingers binding DNA

���Physiological role of NK cells���

is to protect against viral infections and cancer

Humans lacking NK cells are particularly susceptible to: -  Epstein-Barr Virus Fleisher, J. Pediatrics 1982

-  Cytomegalovirus and other herpesviruses Biron, NEJM 1989

-  Papillomavirus (cervical cancer) and Herpes Simplex Virus Ballas, J. Allergy Clinical Immuno 1991

-  Varicela Zoster Virus Etzioni, J. Peditrics 2005

NK cells are critical to early, innate host defense against pathogens

0

20

40

60

80

100

% S

urvi

val

0 5 10 15 Day

WT B6 Littermates

NK-Deficient B6 mice

Mouse Cytomegalovirus 105 pfu i.p.

Loh JVI 2005

NK Cells - Where do they live?

~5-20% peripheral blood lymphocytes

~5% lymphocytes in spleen, abundant in liver

Low frequency in thymus, bone marrow, uninfected lymph nodes and lymphatics – but increase with infection

>70% of lymphocytes in decidual tissue

NK Cells - What do they do?

Cell mediated-cytotoxicity – “natural killing”

Antibody-dependent cellular cytotoxicity (kill antibody-coated cells via activating Fc receptor CD16)

Early γ-interferon production

Secrete TNFa, LTa, GM-CSF, IL-3, M-CSF, IL-5, IL-10, IL-13, MIP-1a, MIP-1b, RANTES, etc. (but NOT IL-2 or IL-4 or IL-17 or IL-22)

IL-15"IL-12"

IFN-γ pDC"

How do NK cells sense their environment?������

Cytokines produced by infected epithelial or myeloid cells

Epithelial or Myeloid cell

TLR

Bacteria, virus, parasites, fungus

Cytokines (IL15, IL12, IL18)

NK cell Cytokine receptor

Interferon-γ Chemokines

“Stressed” cells – upregulate host-encoded ligands��� for activating NK receptors

Host cell Host-encoded

“stress-induced” protein

Bacteria, virus, fungus, parasite

NK cell

“Stress-induced ligand” receptor

(e.g. NKG2D)

Kill! Interferon-γ

DNA damage (tumors)

Host cell

Infected cells express virus-encoded ligands ���for activating NK receptors

Host cell

Virus-encoded protein

NK cell Virus-specific NK receptor

Kill! Interferon-γ

Host cell

Viral infection

How are NK cell responses regulated?

Class I+ tumorsgrow in vivo

Class I- tumorsare rejected

Class I- tumorsin NK-depleted

mice grow in vivo

NK Cells Reject Tumors Lacking MHC Class I

NK cells like to kill cells lacking MHC class I – “missing-self”

Karre et al. 1986 Nature 319:675

Physiological role for NK cell inhibitory receptors for MHC class I- Detection of virus-infected cells?

Virus Protein Effect on class I Adenovirus E3-k19 Retain in ER HSV-1,2 ICP47 Blocks TAP EBV EBNA1 Block peptide generation HCMV US2, US11 ER to cytosol HCMV US3 Retain in ER HCMV US6 Blocks TAP HCMV US10 Degrades HLA-G MCMV m152 Retain in ER MCMV m04 Associates with H-2 MCMV m06 Lysosomal degradation HHV8 K3, K5 Endocytosis HIV-1 Nef Endocytosis

Structural differences between���MHC class I-specific inhibitory receptors

in mice and humans

s-s

N N

Mouse Ly49

Human Killer cell Ig-like Receptor (KIR)

C

ITIM

2 (or 3) Immunoglobulin -like domains

Long cytoplasmic domain

Type II Type I

C-type lectin-like

KIR2DL1 : HLA-C2 allotypes (Cw2, 4, 5, 6=Lys80)

KIR2DL2 & KIR2DL3 : HLA-C1 allotypes

(Cw1, 3, 7, 8=Asn80) KIR3DL1 : HLA-Bw4 KIR3DL2: HLA-A3

HLA specificities of human KIRs

C

KIR2DL

C

KIR3DL

Lanier, Ann Rev Imm 2005

Ly49 Receptors C-type lectin-like superfamily (but don’t bind sugars) 10-20 functional genes on mouse chromosome 6 Extensive allelic polymorphism (no rearrangement); mono-

allelic expression possible Expressed by subsets of NK cells and memory T cells

(usually CD8+ T cells) Inhibitory Ly49 recognize polymorphic H-2D and H-2K Activating Ly49 receptors - no intrinsic signaling -associate with DAP12 ITAM-adapter protein

Killer Cell Ig-like Receptors (KIR)

Ig superfamily 7-12 functional genes on human chromosome 19q Extensive allelic polymorphism (614 alleles!) no rearrangement;

mono-allelic expression possible Expressed by subsets of NK cells and memory T cells (mostly

CD8+ T cells) Inhibitory KIR2DL recognize HLA-C; KIR3DL recognize HLA-A, -B Activating KIR - no intrinsic signaling -associate with DAP12 ITAM-adapter protein

“Missing-self” MHC on a cell is not sufficient for an NK cell to attack

NK cells require activating receptors to

detect ligands on the target cell to initiate a response

Activating NK receptors - ligands •  Human & mouse CD16-FcεRIγ or ζ…………..IgG •  Human CD2……..………………….…………CD58 •  Human 2B4 (CD244)-SAP……………………CD48 •  Human & mouse DNAM-1 (CD226)………....CD112, CD155 •  Mouse PILRb-DAP12………………………….PILR-L •  Human NKG2D-DAP10………………………MICA/B, ULBP •  Mouse NKG2D-DAP10/12……………………RAE-1,H60, MULT-1 •  Mouse Ly49H-DAP12………………………….MCMV m157 •  Mouse Ly49P-DAP12…………………………..MCMV ? •  Human CD94-NKG2C-DAP12………………..HLA-E, HCMV? •  Mouse CD94-NKG2E-DAP12…………………Qa1, poxvirus? •  Human & mouse NKp46-FcεRIγ or ζ…..…...….? •  Human NKp30-FcεRIγ or ζ………………….….B7-H6 •  Human NKp44-DAP12……………………….. ? •  Human NKp80 (KLRF1)……………………….AICL •  Human NKp65 (KLRF2)……………………….KACL •  Mouse NKR-P1c-FcεRIγ…………………....……?

Normal healthy cells

RBC neural cells

Infected cells tumor

Infected cells tumor

Ljunggren & Malmberg NRI 2007

Factors boosting NK cell lytic activity

Antibody-dependent cellular cytotoxicity

Activating CD16 Fc receptor on NK cells and macrophages mediates Herceptin- and Rituxan-induced human tumor elimination

Clynes Nat Med 2000

Expressed by NK cells, T cells, DC

Triggers cytotoxicity in NK cells, CTL

Important cancer immmunosurveillence

Promotes Th1 differentiation

Ligands - CD155 (PVR)

CD112 (PRR-2, nectin-2)

Y322 S329

V

V

NH2

S S

S S

COOH

DNAM-1 (CD226) - an activating NK receptor -

Fyn à PKC à

DNAM-1-deficient mice are more susceptible to chemical (methylcholanthrine)-induced sarcomas

Iguchi-Manaka JEM 2008

Koch Trends Imm 2013

Natural Cytotoxicity Receptors ITAM-coupled activating receptor NKp46 expressed by most NK cells in humans and mice NKp46 also expressed by some ILC, & γδ T cells NKp30 & NKp44 in humans, not mice Involved in recognition and killing of certain tumors Ligands poorly defined – broadly distributed (except B7-H6 for NKp30)

NKG2D –  C-type lectin-like superfamily –  1 gene, non-polymorphic, conserved mice - humans –  Homodimer expressed on all NK cells, γδ T cells, and CD8+ T cells –  R in transmembrane associates with D in DAP10 transmembrane

DAP10 –  10 kd homodimer –  Cytoplasmic YINM recruits Grb2 & p85 PI3-kinase

H60c H60b

NKG2D ligands •  MHC class I-like

–  don’t require peptide or b2-microglobulin

•  Bind with nM affinity to NKG2D

•  Low levels expressed on healthy tissues

•  Induced on virus-infected cells and tumor cells

•  Induced by DNA damage (ATM/ATR pathway)

•  Elevated in autoimmune diseases •  (rheumatoid arthritis, celiac disease, diabetes, atherosclerosis)*

*Disclosure – I have licensed patents on blocking NKG2D in autoimmune disease

NKG2D on NK cells, γδ T cells and CD8+ T cells detect NKG2D ligands on abnormal cells

Guerra Immunity 2008

Increased incidence of myc oncogene-induced B cell lymphomas in NKG2D-deficient mice

NK cells and Cancer ������

Caveat���������

All NK receptors are expressed by other cell types –������

No mouse models exist that exclusively lack NK cells without effects on other cell lineages���

��� ���

5

Abbas & Lichtman, Cellular & Molecular Immunology, 5th Ed, 2003

Abbas & Lichtman, Cellular & Molecular Immunology, 5th Ed, 2003

Lanier Nat Rev Immunol 8:259, 2008

Proliferation

Natural Killer cells are critical for control of cytomegalovirus

MCMV-infected cell

NK cell

Ly49H

DAP12

DAP10

Ly49H drives NK cell responses ���to cytomegalovirus in B6 mice

Syk & ZAP70

Cytotoxicity IFN-γ

Proliferation MCMV control

p85 PI3 kinase/Vav1

m157

7.92 1.18

0.99 89.9

7.96 1.95

0.87 89.2

7.53 21.7

0.47 70.3

7.3 16.1

0.37 76.2

1.07 6.75

0.041 92.2

0.8 0.96

0.078 98.2

d 0 d 1.5 d 7 d 14 d 28 d 50

CD45.1 (donor type)

Ly49

H

MCMV-specific NK cells expand during infection and are long-lived!

Track NK cells

MCMV Inject wildtype CD45.1 NK cells

Ly49H-deficient mouse (CD45.2)

Expansion and contraction of adoptively transferred Ly49H+ NK

cells during MCMV infection

0

5

10

15

20

25

0 10 20 30 40 50 days post-infection

% L

y49H

+ N

K c

ells

in s

plee

n

105 104

102

103

104

105

106

0 10 20 30 40 50 days post-infection

Abs

. no.

of L

y49H

+ N

K c

ells

(spl

een)

0

5

10

15

20

25

0 10 20 30 40 50 days post-infection

% L

y49H

+ N

K c

ells

in li

ver

105 104

102

103

104

105

106

Abs

. no.

of L

y49H

+ N

K c

ells

(liv

er)

0 10 20 30 40 50 days post-infection

100 fold expansion

1000 fold expansion

MCMV Ly49H+ NK cells

Mouse lacking Ly49H NK cells

Long-lived memory NK cells protect neonatal mice against MCMV infection better than naïve NK cells

MCMV Adult naïve or

memory NK cells

Newborn CMV-susceptible mice

Memory NK cells kill better and make more cytokine on a per cell basis

than naïve NK cells in vitro

Secondary expansion of memory Ly49H+ NK cells requires m157 viral ligand

102

103

104

105

0 2 4 6 8

Days post-infection

Abs

. No.

of L

y49H

+ N

K c

ells

MCMV

MCMV-Δm157

66.5

3.6

0 25 50 75 100

MCMV-Δm157

MCMV

Fold expansion

MCMV

DAP12-/- (CD45.2+)

Naïve NK cells (CD45.1+)

30-50 days

Memory NK cells

MCMV or MCMV-Δm157

DAP12-/- (CD45.2+)

30-50 days

2° Memory NK cells

O’Leary NI 2006

Hapten-specific contact hypersensitivity responses in RAG-deficient mice

day 0 & 1 paint hapten on back skin day 6 or 30 – challenge ear – measure swelling

O’Leary NI 2006

Depletion of NK cells eliminates contact hypersensitivity responses in RAG-deficient mice

day 0 & 1 paint hapten on back skin day 6 deplete NK cells day 6 – challenge ear – measure swelling

Antigen-specific NK cell memory *induced against haptens, HIV-I, influenza, VSV, HSV-1 *adoptively transfer hapten-specific contact hypersensitivity response to unimmunized recipients *reside exclusively in liver *require CXCR6 to mediate function *receptors responsible for antigen recognition unknown Paust NI 2010

NK cells •  Keep you alive during certain viral infections

•  Regulated by inhibitory and activating receptors

•  Receptors are evolving rapidly

•  Possess immunological memory