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    The Immune System andInfection

    the Human and animal Battle against

    the Microbe WorldPresented by Patricia A. Lafleur

    Harvard - HHMI Summer Outreach Program

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Genomics Medicine and System Biology

    Genetics Gene Protein

    Biochemistry Gene Protein

    Molecular

    Biology

    Gene Protein

    Functional expression

    Functional expression

    Functional expression

    Expression profile

    Model Organisme/

    Clinical manifestation

    ProteomicsGenomics

    Genom Proteome

    New

    Therapy

    New Druge12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Our 1stLine of Defense...

    The Integumentary System

    Skin

    Mucous membranes

    Mucous

    provides a physical barrier preventingmicrobial access

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    The Invaders . . .

    Bacteria

    Viruses < Click to find out more about

    Microbes & Disease >

    parasitessuch as fungi,

    protista, &

    wormsworm trichura.jpg

    https://reader003.{domain}/reader003/html5/0302/5a992afe48fc2/5a992b022506

    http://www.sdnhm.org/exhibits/epidemic/teachers/background.html

    http://www.skidmore.edu/academics/biology/plant_bio/lab13.FUNGI.html

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

    http://www.sdnhm.org/exhibits/epidemic/teachers/background.htmlhttp://www.sdnhm.org/exhibits/epidemic/teachers/background.htmlhttp://www.sdnhm.org/exhibits/epidemic/teachers/background.htmlhttp://www.sdnhm.org/exhibits/epidemic/teachers/background.htmlhttp://www.sdnhm.org/exhibits/epidemic/teachers/background.html
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    Other mechanisms of Defense...

    Physiological variables

    pH of our environment

    temperature of our environment

    chemical defenses

    nitric oxide, enzymes, proteins, complement

    AND the IMMUNE SYSTEM

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Immune System : 2 branches

    The Innate Immune system =

    a general response to anything other than

    recognized self cells

    The Adaptive Immune System =

    a specific counter-assault against a known

    foreign invader [previously recognized]

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Major Concepts -

    What Happens during an infection ?

    How can immune cells distinguish foreign

    invaders from our own cells ?

    How can we make 100,000,000 different

    antibodies with only 30,000 genes ?

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    What Happens during an infection?

    Innate Immunity -the troops are called to battle

    injury & infection macrophages slip between cells [extravasation]to

    arrive

    cytokine chemicals attract other troops

    [chemotaxis] histamine chemicals dilate blood vessels for easier

    access to injury [vasodilation]

    < Click on link to view Movie of inflammation > http://www.muhealth.org/~pharm204/inflammation.mov

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

    http://www.muhealth.org/~pharm204/inflammation.movhttp://www.muhealth.org/~pharm204/inflammation.movhttp://www.muhealth.org/~pharm204/inflammation.movhttp://www.muhealth.org/~pharm204/inflammation.mov
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    What are macrophages ?

    Phagocytic cells - able to

    ingest small foreign invaders

    neutrophils

    monocyte

    http://www.mnsfld.edu/~mcb/images/macrophage.gif

    they release

    cytokines thatenhance the

    immune response

    http://www.b iology.arizona.edu/imm unology/tutorials/imm unology/graphics/mphage2.gi

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

    http://www.mnsfld.edu/~mcb/images/macrophage.gifhttp://www.mnsfld.edu/~mcb/images/macrophage.gifhttp://www.mnsfld.edu/~mcb/images/macrophage.gifhttp://www.mnsfld.edu/~mcb/images/macrophage.gif
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    Mast cells /basophils

    release histamine that

    dilates blood vessels causes redness

    [erythrema],swelling[edema],and heat [fever]

    https://reader003.{domain}/reader003/html5/0302/5a992afe48fc2/5a992b063c8b9.jpg12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Your Challenge . . .

    You are a macrophage in the followinggame

    your mission is to phagocytize the mumpsviruses

    use your mouse on the arrowsor or

    HINT: antigens are specialized proteinson cell surfaces that provide I.D.recognition

    http://www.pbs.org/wgbh/nova/aids/immunewave.html

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

    http://www.pbs.org/wgbh/nova/aids/immunewave.htmlhttp://www.pbs.org/wgbh/nova/aids/immunewave.htmlhttp://www.pbs.org/wgbh/nova/aids/immunewave.html
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    Summary:

    Macrophages are able to launch the firststrike

    more help is needed to overcome rapidlyreproducing invaders

    Help from the ADAPTIVE IMMUNE Systemresults in a coordinated successfuldefense !

    Major players . . . the B lymphocytes12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    How can antibodies distinguish our

    self from foreign invaders?

    Adaptive Immune System - function

    There are 2 types of lymphocytes: T lymphocytes [ T - Helper cells ]- help

    signal immune cells into action

    B lymphocytes [ B cells ]- make specialproteins called antibodies

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    How can antibodies distinguish

    selfcells from foreign invaders?

    Adaptive Immune System - origin

    There are 2 types of lymphocytes: 1st Type -

    T lymphocytes -[ T - Helper cells ]

    begin in thered bone marrow

    http://www.sirinet.net/~jgjohnso/skeletonorg.html12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Stem cells in the bone marrow

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    T AND B CELLS STEM CELL CULTURE

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    COCULTIVATION T CELL STEM CELL AND

    HIV PBMC PATIENT

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    REAKTIFITAS RESPONS IMUN PBMCs

    DENGAN MARKER CD4,CD8,CD14

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    M2

    M1

    B

    TH2

    NK

    NKT

    M

    DC

    DC

    B

    CDTL8 C

    GR1 CD 11b

    ma ba eo

    TH1

    CD4,28,FOXP3

    CD8,28

    CD4,28

    CD4,28

    Reactive oxygen, NO, IL-

    1b, TNF alfa,, IL-6, 12,23,

    tissue destruction, killing

    of parasit, tumors resisten

    IL-2, TNF- IFN- MIG, IP 10

    Tipe II inflamation, tissue

    remodelling, angeogenesis,

    parasit encapsulation, tumor

    promotion, IL 10 TGF beta,

    arginase

    Mucuc producing cells

    IL-15, 18

    Differentiation Ig

    subtype switching

    T regulatory cells

    IL-2

    IFN-

    Endothelial cells

    Endothelial cells

    IMMUNE

    REGULATION

    Fedik Abdul Rantam, 2008

    IL-4,10,13

    IL-4,10,13,IFN-

    IFN-

    B; B cell, ba:basophil, CTL;cytotoxic cell T,

    DC: dendrit cell, Eo:eosinophile, M; monocyte,

    Ma; mastcells, M1; macrophage, M2:

    macrophage, NK:natural killer cell,

    NKT;natural killer T cell, Th; T helper cell .12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    & migrate to the thymus gland ...

    TheseLymphocytes aresorted into2 types

    Identification tag is aprotein called Major

    Histocompatability

    Complex [MHC]

    Self- IDForeign12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    & in the thymus gland . . .

    All diversely varying MHC lymphocytes will wait

    for a call to action . . .

    All self MHC cells are destroyed - to removethe chance of friendly fire casualties

    Self- IDForeign

    Saved to be

    educated in

    body defense

    Dropped out!

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    These Lymphocytes will mature into

    T-Helper cells

    They function tostimulate B cells toactivate their attack against the invaders

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Adaptive Immune System

    The 2nd type of lymphocyte is:

    B lymphocytes [ B cells]- start in the bonemarrow and circulate through the body

    they are called into action when stimulated by

    a foreign antigen. . . [ usually a protein fromthe invader]

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    When an invader attacks. . .

    An antigen is phagocytized by the B cell

    is broken into non-infective pieces

    & attached to the cells MHC when processedthrough the cells machinery

    MHC-antigen complex is placed on the cell

    membrane surface

    where it is recognized by the T Helper cell

    http://www.nature.com/nrm/journal/v2/n3/animation/nrm0301_179a_swf_MEDIA1.html

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

    http://www.nature.com/nrm/journal/v2/n3/animation/nrm0301_179a_swf_MEDIA1.htmlhttp://www.nature.com/nrm/journal/v2/n3/animation/nrm0301_179a_swf__MEDIA1.htmlhttp://www.nature.com/nrm/journal/v2/n3/animation/nrm0301_179a_swf__MEDIA1.htmlhttp://www.nature.com/nrm/journal/v2/n3/animation/nrm0301_179a_swf_MEDIA1.html
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    When help arrives . . .

    The T-helper cell receptor docks with the

    B cells MHComplex

    B cells proliferate . . .Antigen & T-helper cell

    Proliferation of

    cell line

    Nave

    cell

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    B cells differentiate into . . .

    Antibody producing cells [attack mode]

    Memory cells [remembers & future

    protection]Antigen & T-helper cell

    memory

    antibodies

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    The RESULT . . .

    The Antibody producing B cells

    mounts a successful attack against the

    invader

    the memory B cells save the recognition

    ID for many years in preparation for futureinvasion

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    How can we make 100,000,000 different

    antibodies with only 30,000 genes?

    Problem:

    microorganisms easily out-number the total number

    of genes on the human genome if only one gene was responsible for coding for one

    antibody, there still wouldnt be enough information

    to use

    Question:

    How can such a small amount of information

    be used for successful antibody diversity ?12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Consider the following . . .What is true about the different cells of the body?

    Which Statement is most correct ?a All cells in the body are the same and function the

    same way

    b All cells are the same, but function differentlybecause they are located in different places

    c All cells have the same genetic material, but differentcells use different active genes to make themfunction differently

    Does this same principle apply to antibodies ?12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    The correct answer is . . .

    c All cells have the same genetic material, but

    different cells use different active genes to makethem function differently

    < Click on Animation Link to learn how gene segments are combined toproduce a large number of diverse antibodies >

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Summary

    What Happens during an infection ?

    The immune system activates a multitude ofcharacters to defend the body in a variety of

    ways.

    Several players work together, feedbacksystems enhance or suppress functions as

    changes occur

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Summary

    How can immune cells distinguish foreign

    invaders from our own cells ?

    By using the invaders own antigen, immune

    cells can be produced for specific organisms &

    used to enhance the defense effort

    [ as long as the invading organism is the

    only target ! ]

    12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    Summary

    How can we make 100,000,000 different

    antibodies with only 30,000 genes ?

    Mixing & matching pieces of genetic materialproduce huge numbers of antibody, as well as

    very specific antibody

    The immune system is well equiped todefend the human body against the daily

    onslaught of microorganisms . . . If

    everything goes as planned . . .12 .5.14 FA. Rantam, Virol & Immunol. 2014

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    For further information . . .

    Immunology Project Resources

    Understanding Autoimmune Disease

    http://www.niaid.nih.gov/publications/autoimmune/work.htm

    Antibody descriptions [IgG, IgM, IgA]

    http://sprojects.mmi.mcgill.ca/immunology/Ig_text.htm

    Immunology Hyperlinked History & Molecular Movies

    http://www.bio.davidson.edu/courses/Immunology/Bio307.html

    Nature Magazine & Immunology

    http://www.nature.com/nature/view/030102.html

    NCBI Genome Database

    http://www.ncbi.nlm.nih.gov/

    NCBI Genome Base

    http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1589796

    Immune System Animation Links through Anatomy & Physiology Groups

    http://science.nhmccd.edu/biol/ap2int.htm

    Pier,G. , Lyczak,J., Wetzler,L; Immunology, Infection, and Immunity; American Society for Microbiology

    Press 2004 p 12

    http://www.niaid.nih.gov/publications/autoimmune/work.htmhttp://sprojects.mmi.mcgill.ca/immunology/Ig_text.htmhttp://www.bio.davidson.edu/courses/Immunology/Bio307.htmlhttp://www.nature.com/nature/view/030102.htmlhttp://www.ncbi.nlm.nih.gov/http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1589796http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1589796http://science.nhmccd.edu/biol/ap2int.htmhttp://science.nhmccd.edu/biol/ap2int.htmhttp://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1589796http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1589796http://www.ncbi.nlm.nih.gov/http://www.nature.com/nature/view/030102.htmlhttp://www.bio.davidson.edu/courses/Immunology/Bio307.htmlhttp://sprojects.mmi.mcgill.ca/immunology/Ig_text.htmhttp://www.niaid.nih.gov/publications/autoimmune/work.htm