8
www.aidsmap.com In this issue: Lesley Odendal  page 2 HIV & AIDS Treatme nt in Practice Issue 204 | 24 June 2013 © Copyright NAM — All rights reserved. Please photocopy and pass on. NAMpubli she s a wide ran ge of pub licati ons on treatment for HIV . For det ail s con tact: NAM, 77a Tradescant Road, London, SW8 1XJ, UK tel +44 20 3242 0820 fax +44 20 3242 0839 email [email protected] web www.aidsmap.com Xpert MTB/RIF diagnostic test for TB: a global update; by Background: Improving TB diagnosis through use of the Xpert MTB/RIF assay World Health Organization recommendations on use of Xpert MTB/RIF Global update on the use of Xpert MTB/RIF Addressing funding constraints Xpert MTB/RIF roll-out Diagnostic yield Using Xpert MTB/RIF in active case finding Xpert MTB/RIF for detection of rifampicin resistance The use of Xpert MTB/RIF in combination with other diagnostic methods Conclusion Further resources

HATIP 204: Xpert MTB/RIF for TB diagnosis: Global update

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In this issue:

Lesley Odendal  page 2

HIV & AIDS Treatment in Practice

Issue 204 | 24 June 2013

© Copyright NAM — All rights reserved. Please photocopy and pass on.

NAMpublishes a wide range of publications on treatment for HIV. For details contact:

NAM, 77a Tradescant Road, London, SW8 1XJ, UK

tel +44 20 3242 0820 fax +44 20 3242 0839 email [email protected] web www.aidsmap.com

Xpert MTB/RIF diagnostic test for TB: a global update; by 

•Background: Improving TB diagnosis through use of the Xpert MTB/RIF assay

•World Health Organization recommendations on use of Xpert MTB/RIF

•Global update on the use of Xpert MTB/RIF

•Addressing funding constraints

•Xpert MTB/RIF roll-out

•Diagnostic yield

•Using Xpert MTB/RIF in active case finding 

•Xpert MTB/RIF for detection of rifampicin resistance

•The use of Xpert MTB/RIF in combination with other diagnostic methods

•Conclusion

•Further resources

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HATiP | Issue 204 | 24 June 2013 page 2

Xpert MTB/RIF diagnostic

test for TB: a global update

By Lesley Odendal

Key points

This edition of HATIP was kindly supported by the HIV/AIDS

Department of the World Health Organization. Thanks to Dr Linh

Nhat Nguyen and Dr Wayne Van Gemert of the Stop TB department

(WHO) and Dr Eyerusalem Negussie of the HIV/AIDS department

(WHO) for their review of this edition.

 

Background: Improving TB diagnosis through use

of the Xpert MTB/RIF assay

Only 66% of the estimated number of incident TB cases were

diagnosed and notified to WHO in 2011. The low rate of case

detection is due in part to an overreliance on sputum smear

microscopy, a diagnostic test with low sensitivity, to diagnose TB inmany low- and middle-income countries where a high HIV

prevalence makes the use of smear-microscopy ineffective.

Smear microscopy is a less sensitive means of detecting TB

bacteria in people living with HIV. This is because people with more

advanced HIV disease tend to have lower levels of TB bacteria in

their sputum. As a result, a larger proportion of people with HIV will

test smear negative than in the general population. In order to

diagnose TB in these smear-negative suspects bacterial culture has

been used, but bacterial culture can take weeks or months to

deliver a result, by which time a person with HIV may have died.

Diagnosis of drug resistance also remains a particular challenge,

given the infrastructure, biosafety requirements and human

resources needed to conduct traditional culture and drug 

susceptibility testing (DST).The Xpert MTB/RIF test is able to diagnose tuberculosis (TB) in a

single test from a sputum sample. It can also detect resistance to

rifampicin, which in many settings is a reliable proxy for

multidrug-resistant TB (MDR-TB). However, culture and conventional

drug susceptibility testing against second-line anti-TB drugs are still

necessary to confirm or exclude XDR-TB and to monitor response to

MDR-TB treatment.

One of the main benefits of this novel diagnostic is that it gives

results in two hours, allowing for rapid diagnosis and an earlier start

of treatment whereas TB diagnosis from microscopy takes up to two

days, and culture and DST take weeks for detection of TB drug 

resistance.

The Xpert MTB/RIF test also has a sensitivity similar to culture on

solid media, far superior to that of conventional microscopy. The

high sensitivity of Xpert MTB/RIF makes this diagnostic useful in the

diagnosis of TB in people with HIV co-infection, where the sensitivity

of smear microscopy alone is low.

The development of the Xpert MTB/RIF assay for the GeneXpert

platform was completed in 2009 and endorsed by the World Health

Organization (WHO) in 2010.

The successes and challenges of implementing the Xpert

MTB/RIF test received considerable attention at the 43rd Union

World Conference on Lung Health held in Kuala Lumpur in

November 2012.

Previous editions of HATIP have reported on the Xpert MTB/RIF

test and its benefits in active case finding (HATIP 191, May 2012),

as well as how it can be used with other TB diagnostic tools ( HATIP193, May 2012).

This edition examines data and lessons learnt from programmes

where Xpert MTB/RIF has already been implemented in high-burden

TB settings in countries such South Africa, Kenya, India, Cambodia

and Botswana. These findings were presented at the Union

conference and also at the Conference on Retroviruses and

Opportunistic Infections (CROI) in March 2013.

World Health Organization recommendations on

use of Xpert MTB/RIF

The World Health Organization recommends that:1

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• The Xpert MTB/RIF assay is a new test which allows

the diagnosis of tuberculosis within two hours from a

single sputum sample.

• Its use as the initial diagnostic test is recommended

by the World Health Organization for all people with

suspected multidrug-resistant TB (MDR-TB) and for all

people with HIV who have suspected TB.

• Its use is also recommended as a follow-on test after

smear microscopy where MDR-TB or HIV is of lesser

concern, especially in suspected smear-negative TB.

• The roll-out of the Xpert MTB/RIF test is being

supported by funding from several donors across a

wide range of countries with a high prevalence of

MDR-TB and/or HIV.

• The test improves the rate of diagnosis of both

drug-sensitive and drug-resistant TB.

• The test also supports active case finding, by both

improving the diagnostic yield and by limiting the

waiting time for results. This reduces loss to

follow-up.

• Very rapid initiation of TB treatment has been

achieved by use of Xpert MTB/RIF supported byCommunity Health Facilitators, who provide the link

between the labs, the clinics and the community

health workers.

• Use of Xpert MTB/RIF has also been shown to reduce

the delay in treatment initiation in smear-negative TB

patients.

• While Xpert MTB/RIF and culture testing may have

similar positivity rates, Xpert MTB/RIF significantly

decreases the turnaround time for diagnosis of

rifampicin resistance and can be placed in

decentralised settings.

• Testing for susceptibility to isoniazid and second-linedrugs should be done for all patients identified as

rifampicin-resistant by the GXP.

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“These are the two groups of people who will benefit most from

this diagnostic. HIV-infected individuals co-infected with TB are more

difficult to diagnose with smear microscopy, resulting in delays in

diagnosis, which can lead to death in HIV-infected individuals. We

also want to diagnose people suspected of having MDR-TB asquickly as possible to ensure that they are started on effective

treatment without delay, which in turn reduces the risk of 

transmission of MDR-TB in the community,” Dr Christopher Gilpin of 

the WHO Stop TB Department told the conference.2

These recommendations apply to the use of Xpert MTB/RIF in

sputum specimens only, as data on the utility of Xpert MTB/RIF in

extra-pulmonary specimens are still limited. Based on the

generalisation of data from adults, these recommendations alsoapply to children. Although studies have shown that multiple sputum

specimens increase the sensitivity of the Xpert MTB/RIF, WHO

recommends the use of one sputum specimen for diagnostic

testing, given the resource implications of using multiple

specimens.

WHO acknowledges the need for a review of the accuracy of GXP

in detecting extra-pulmonary TB and paediatric TB, and organised

an Expert Group meeting to evaluate the evidence base in May

2013.

Global update on the use of Xpert MTB/RIF

Globally, 966 GXP instruments, comprising of 5017 modules and

1,891,970 Xpert MTB/RIF cartridges had been procured in the

public sector, as of 31 December 2012. The majority of the modules

(2,049) and cartridges (1,108,140) have been procured by South

Africa, where Xpert MTB/RIF testing as the initial diagnostic is

national policy. Other countries which are investing heavily in the

procurement of the GXP platform include Brazil, Cambodia, the

Democratic Republic of Congo, India, Kenya, Tanzania and

Zimbabwe.3

A consultative meeting was held in April 2012 for implementers

and technical partners in the Xpert MTB/RIF roll out, with the aim of 

sharing current information and experiences on the use of the

diagnostic, developing a greater understanding of implementers'

needs and to plan improved co-ordination between country

programmes, donors and partners.

The major recurrent points raised by the implementers included:4

Addressing funding constraints

The high price of the GeneXpert platform and test is the main

barrier to the sustainable scale-up of the technology. SinceDecember 2010, a single Xpert MTB/RIF cartridge cost USD 16.86

at the concessionary price for the public sector, including 

non-governmental organisations, in 145 eligible countries.

In August 2012 the price of cartridges was reduced to USD 9.98

for the public sector in the 145 countries due to a ‘buy down’ by

PEPFAR, USAID, UNITAID and the Bill and Melinda Gates

Foundation, from Cepheid, the only manufacturers of the GeneXpert

technology. This concessionary price is not available to the for-profit

private sector.5 (See a full list of eligible countries on the FIND

website.)

Approximately 1.4 million Xpert MTB/RIF test cartridges and over

200 GeneXpert instruments will be made available from 2013

-2015 through the TBXpert Project to 21 countries including 

Bangladesh, Belarus, Cambodia, the Democratic Republic of Congo,Ethiopia, India, Indonesia, Kenya, Kyrgyzstan, Malawi, Mozambique,

Myanmar, Nepal, Pakistan, Philippines, Moldova, Swaziland,

Uganda, Tanzania, Uzbekistan and Vietnam.

The USD 25.9 million project is funded by UNITAID and

implemented by the WHO Stop TB Department and the Stop TB

Partnership, including partners such as the Global Laboratory

Initiative (GLI), TB REACH, the EXPAND-TB Project, Interactive

Research and Development (IRD) and the African Society for

Laboratory Medicine (ASLM). By linking this broad network of 

partners and existing initiatives for TB laboratory strengthening and

innovative approaches to expand access to vulnerable populations,

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•Xpert MTB/RIF should be used as the initial diagnostic test in

individuals suspected of having MDR-TB or HIV-associated TB.

(Strong recommendation).

•Xpert MTB/RIF may be considered as a follow-on test to

microscopy in settings where MDR-TB or HIV is of lesser concern,

especially in further testing of smear-negative specimens.

(Conditional recommendation acknowledging major resource

implications.)

•User satisfaction: Implementers indicated an overall high level of 

satisfaction, describing Xpert MTB/RIF as “fast, easy-to-use,

modern and much less cumbersome than conventional TB

diagnostic techniques.”

•Need for price reduction: The price of the test cartridge was

repeatedly stated as the main obstacle to an accelerated and

sustainable roll-out of the test (but it should be noted that this

consultation took place before the price reduction to USD 9.89).

•Diagnostic and clinical algorithms: Investment in time and

resources to develop and implement effective diagnostic and

clinical management algorithms incorporating the new

technology is needed.

•Errors and invalid results: In a small but significant number of 

sites, errors and invalid results in the initial phase of 

implementation raised anxiety regarding use of Xpert MTB/RIF.

•Scaling up treatment capacity to match diagnostic capacity:

Treatment of rifampicin-resistant TB cases that are diagnosed by

Xpert MTB/RIF was a major concern in many sites which did nothave the effective second-line drugs to treat newly diagnosed

patients. Correct diagnosis in the absence of appropriate

treatment nevertheless allows for patients to protect the health

of their families.

•Need for innovation: Technical innovation is needed to allow for

Xpert MTB/RIF to be used in more settings at levels closer to the

point of care, where lack of reliable electricity and high

temperatures may otherwise prevent the reliable use of the test.

Implementation of electronic information management systems

and mHealth initiatives through the use of mobile telephones will

facilitate stronger links between diagnosis and follow-up care.

•Private sector access: Adoption of Xpert MTB/RIF by the large

private sector in many high-burden countries would be highlybeneficial for increasing patient access to rapid and reliable

diagnosis, and at the same time replacing technologies that are

not endorsed by WHO. The establishment of collaborations

between private providers and national TB control programmes

would be mutually beneficial, allowing for private providers to

access concessional prices and for national TB control

programmes to ensure that patients whose TB is diagnosed in

the private sector are duly reported and subsequently registered

for appropriate treatment.

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the TBXpert Project hopes to build the capacity of countries to

receive and effectively use the GXP technology.

Information on the availability of the GXP technology, country by

country, is available through a WHO-managed mapping website.

Xpert MTB/RIF roll-out

WHO Stop TB Department’s Laboratories, Diagnostics and Drug 

Resistance Unit has been collecting data from early implementers of Xpert MTB/RIF since 2011. The data collection is intended to

monitor laboratory workload, numbers of tests being performed and

results, and main logistical and operational problems being 

encountered, on a facility basis.

Evidence regarding the impact of the new diagnostic continues to

be gathered. A register of Xpert MTB/RIF research projects is also

being compiled. Twenty-six studies were either underway or already

completed in February 2013, including a large randomised trial to

evaluate the use of Xpert MTB/RIF in primary health clinics for TB

diagnosis in people living with HIV. The TB Neat study is recruiting 

participants in South Africa, Tanzania, Zambia and Zimbabwe.

In a recent editorial introducing a Cochrane Collaboration

Diagnostic Test Accuracy Review, Professor Elizabeth Corbett of the

London School of Hygiene and Tropical Medicine, and Dr DanielleCohen of the Malawi-Liverpool-Wellcome Clinical Research

Programme, raised a number of questions regarding the use of 

Xpert MTB/RIF that still need to be addressed by research.

Research presented at the 2012 World Lung Health meeting 

began to address some of these questions, relating to diagnostic

yield, to use of Xpert MTB/RIF to support TB and drug-resistant TB

diagnosis in peripheral health centres, and in relation to diagnosis

of drug-resistant TB.

Diagnostic yield

Xpert MTB/RIF implementation is intended to improve case

detection of both drug-sensitive and rifampicin-resistant TB cases.

Studies presented from South Africa, India and Cambodia

showed that in settings with a high burden of TB and DR-TB, Xpert

MTB-RIF resulted in encouraging improvements in diagnostic yield.

The studies also showed that increases in diagnostic yield could be

achieved when testing was decentralised to lower levels of the

health system.

 

South Africa

In Cape Town, South Africa, the phased introduction of Xpert

MTB/RIF across five of the city’s eight sub-districts resulted in an

increase of approximately 20% in diagnostic yield in the first quarter

after introduction, although this increase was not sustained in

subsequent quarters.7

All TB suspects were screened according to the following 

algorithm:

The 2011 fourth-quarter mean diagnostic yield across the

sub-districts for DS-TB was found to be 20.3% for the Xpert MTB/RIF

algorithm compared to 16.9% for the standard-of-care smear

microscopy/culture algorithm. However, this difference was not

sustained for the second time period. For the second quarter of 

2012, the Xpert algorithm’s mean diagnostic yield decreased to

16.8% compared to 16.3% for the smear/culture algorithm.

The mean MDR-TB yield for the Xpert MTB/RIF algorithm was

7.3% and 5.3% in the first and second time periods respectivelycompared to 4.7% and 5.3% for the smear/culture algorithm. “The

increase in the MDR-TB diagnostic yield suggests some benefit for

DR-TB, but extra time points would be needed,” said Dr Naidoo.

In this study, it is important to note that the yield refers to the

algorithm and that the number of sub-districts implementing the

Xpert MTB/RIF testing algorithm increased from two in the fourth

quarter of 2011 to three in the first quarter of 2012. This may have

had an effect on the result. In addition, not all suspected TB cases

in the districts implementing the Xpert MTB/RIF algorithm

underwent Xpert MTB/RIF testing, making the decline in yield in the

second quarter of 2012 hard to interpret.

 

India

A 7.2% increase in the diagnostic yield when using XpertMTB/RIF for TB case finding compared to smear microscopy was

found in a feasibility and impact study of using the test at

decentralised laboratories in India, as reported by Dr Naraj Raizada,

Project Manager of Xpert MTB/RIF projects for FIND in India.8

All patients with suspected pulmonary TB (PTB) and

drug-resistant TB (DR-TB) were offered a single Xpert MTB/RIF test

situated at 18 sites in varying settings across India serving a

population of 8.7 million people. 22,345 pulmonary TB and 1,738

DR-TB suspected cases were tested between March and October

2012.

The study compared the diagnostic yield of TB before and after

the establishment of the Xpert MTB/RIF testing facilities. Of the

9124 suspected TB cases tested using smear microscopy at

baseline, 1312 confirmed cases of TB were detected (a 14.3%smear positivity rate). This resulted in an average of 29 TB cases

per site per month. This increased to 47 TB cases per site per

month when using Xpert MTB/RIF. 4422 of the 22,345 TB

suspected cases were confirmed as having TB when the Xpert

MTB/RIF tests were used (a 20% positivity rate).

However, they also conducted an internal comparison of 

diagnostic yield by performing smear microscopy on the same

sputum specimens used in the Xpert MTB/RIF testing. Smear

microscopy yielded a positivity rate of only 12.8%, compared to the

20% positivity rate using Xpert MTB/RIF on the same sputum

specimens. 1559 cases of TB were missed using smear microscopy.

Xpert MTB/RIF also diagnosed 569 cases of rifampicin-resistant TB

© Copyright NAM — All rights reserved. Please photocopy and pass on.

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•How can Xpert MTB/RIF be integrated into systematic screening 

activities, particularly in populations at very high risk of TB, such

as people living with HIV?

•At what level of the health system should access to Xpert

MTB/RIF be prioritised? How does it perform in peripheral health

centres?

•How can TB programmes best use this valuable new tool for

detection and management of rifampicin resistance?

•How can we effectively evaluate this test in routine practice,

where access to culture is generally non-existent and where

patient-important outcomes are more important?6

•Smear and culture sub-districts: two smears in low-MDR risk

patients, and two smear plus culture and drug susceptibility

testing in high-MDR risk patients.

•Xpert MTB/RIF sub-districts: two sputum samples collected from

all suspected TB cases. If sample 1 was negative and the patient

was HIV negative the second sample was discarded. If sample 1

was negative and the patient was HIV positive the second

sample was submitted for culture. If sample 1 was positive butrifampicin-sensitive, a confirmatory smear was carried out on

sample 2. If sample 1 was positive and rifampicin-resistant,

sample 2 was submitted for smear, culture, LPA and second-line

drug susceptibility testing.

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needing to return to the facility to provide a second sample.

Although TB care and diagnostic tests are free in Kenya, patients

are charged a minimum of KSh100 (equal to one day’s wage) to

register at the health facility.

Of the 1171 culture tests performed on non-contaminated

specimens between December 2011 and July 2012, 9.4 % (n=99)

were found to be culture positive. The culture arm had to be

stopped prematurely due to poor supply chain management which

did not allow for reliable supply of the culture reagent, leading all

smear-negative samples to receive Xpert MTB/RIF testing.

The Xpert MTB/RIF test found a similar positivity rate for

drug-resistant (DR)TB. Of the 824 smear-negative patients screened

using Xpert MTB/RIF between December 2011 and September

2012, 8.6 % (n=71) were found to have TB, while two cases of 

rifampicin resistant TB were found.

One of the main advantages of using Xpert MTB/RIF over the

culture testing was that the time it took for the clinician to receive

results after sending the sputum sample decreased from five weeks

to five days.

Xpert MTB/RIF for detection of rifampicin

resistanceRifampicin resistance as a proxy for MDR-TB

According to WHO guidelines on the use of Xpert MTB/RIF,

resistance to rifampicin, as identified by Xpert MTB/RIF, should be

used as a proxy for MDR-TB. However, a retrospective patient-based

analysis which assessed the proportion of isoniazid-susceptible TB

cases among rifampicin-resistant TB cases in Botswana, has found

that a high proportion of rifampicin-resistant TB isolates are still

susceptible to isoniazid.12

The study by Dr Valentina Anisimova of KNCV in Botswana

gathered data on isoniazid susceptibility among rifampicin-resistant

TB isolates by examining the results from DR-TB surveys conducted

in the country in 1996, 1999, 2002 and 2007 to 2008. It also used

drug-sensitivity testing results from the Botswana NationalReference Laboratory from 2006 until 2010.

32.2% and 23.8% of new rifampicin-resistant TB cases were

found to be susceptible to isoniazid in the DR-TB surveys and

routine data respectively. Among rifampicin-resistant retreatment

cases 43.1% and 25.2% were found to be susceptible to isoniazid in

the DR-TB surveys and routine data respectively. Combined, 37.9%

of rifampicin-resistant cases in the DR-TB and routine surveys were

found to be isoniazid-susceptible . The study also found

considerable fluctuation in the proportion of patients with

isoniazid-susceptible TB between surveys at different time points.

“Testing for susceptibility to isoniazid should be done for all

patients identified as rifampicin-resistant by the Gene Xpert,” said

Dr Anisimova. “The proportion of isoniazid-susceptible

rifampicin-resistant isolates is changing over time and should beclosely monitored to inform management of patients with DR-TB.”

Dr Anisimova also recommended that isoniazid should be

included in the treatment regimen until isoniazid resistance is

confirmed. This study has important implications for the current

WHO guidance of using rifampicin resistance as a proxy for MDR-TB

which should be reviewed. Although it is recommended to send

rifampicin-resistant TB samples for further DST, including isoniazid

in the treatment regimen until resistance is confirmed may result in

better treatment outcomes for patients.

 

Xpert MTB/RIF and detection of DR-TB

TB/HIV Care Association’s intervention in Sisonke district in

KwaZulu-Natal, South Africa13 (described previously) detected 140

cases of rifampicin-resistant TB (a diagnostic yield of 9.9%)

compared to 8.7% in the rest of the province. DR-TB patients have

been initiated on treatment at a decentralised hospital at

sub-district level, compared to the standard approach of being 

hospitalised at a centralised facility, 150 km from Sisonke district.

This has alleviated the burden on the patient’s family members to

visit their relatives.

DR-TB patients are also discharged after two consecutive

negative smears, as opposed to the policy in the province of only

discharging patients at the end of the six-month injectables period.

TB/HIV Care Association is also using outreach teams made up of 

an enrolled nurse and a counsellor to provide patients with

injections at home.

The use of Xpert MTB/RIF has also allowed for the time from

sputum collection to treatment initiation to be dramatically reduced,

rendering patients uninfectious sooner. Between January and June

2012, 36% of MDR-TB patients were initiated on treatment less

than 48 hours after providing a sputum specimen, while 18% were

initiated on treatment between two and five days after providing 

sputum.FIND has also established 12 new Xpert MTB/RIF testing sites in

difficult-to-reach areas in India for rifampicin drug-sensitivity testing 

to supplement the capacity of the existing reference laboratory

network of the National TB Programme.14 It aims to conduct 24,000

rifampicin-resistance tests and expects to detect 7,000 cases of 

MDR-TB annually. Six of the 12 Xpert MTB/RIF testing sites had

been established and used between August and October 2012. Of 

the 2900 suspected DR-TB cases tested using the Xpert MTB/RIF,

462 (16%) were diagnosed with MDR-TB.

The use of Xpert MTB/RIF in combination with

other diagnostic methods

The benefits of using a range of TB diagnostics such as smearmicroscopy, urinary lipoarabinomannan (LAM) assays and Xpert

MTB/RIF have been discussed in previous editions of HATIP. The

advantage of these diagnostic tools is that they are more sensitive

and specific. The sensitivity of a test is the percentage of results

that will be correctly positive when a disease is actually present.

Lower rates of sensitivity will produce more false negative results.

The specificity of a test is the percentage of results that will be

correctly negative when a disease is not present. Lower rates of 

specificity will produce more false positive results.

These more sensitive and specific diagnostic tools for TB are

especially important for diagnosing TB in people with HIV, whose

smear microscopy TB test results are often false negatives. Despite

being more sensitive and specific than smear microscopy alone,

Xpert MTB/RIF and urinary lipoarabinomannan (LAM) assays arerapid diagnostics that have suboptimal sensitivity when used alone

in people with HIV who may have TB. Until recently the diagnostic

yield of these tests used in combination for the diagnosis of active

TB was unknown.

However, a study conducted in Uganda in people with HIV found

the sensitivity of the combination of Xpert plus LF-LAM was 87%

(n=88 of 101, 95% CI 0.79-0.93), which was superior to either test

alone (p<0.05) and was similar to the sensitivity of liquid culture

(94%, 95% CI 0.88-0.98, p = 0.17).15

The study, which was presented at the 20th Conference on

Retroviruses and Opportunistic Infections in Atlanta in March 2012,

compared the diagnostic accuracy of sputum smear microscopy,

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sputum culture (solid and liquid), mycobacterial blood culture, Xpert

MTB/RIF testing of archived sputum pellets, and urinary testing for

LAM using a point-of-care lateral flow test (LF-LAM) in people with

HIV with signs or symptoms of TB.

Participants included 101 individuals with culture-confirmed TB

and 107 people with suspected TB in whom TB was excluded

clinically and microbiologically. The study found that among the 101

individuals with confirmed TB, the sensitivity of Xpert MTB/RIF was

77% (95% CI, 0.68-0.85), and was superior to that of LF-LAM which

was found to have a sensitivity of 50% (95% CI, 0.39-0.60, p

<0.001), and smear-microscopy with a sensitivity of 31% (95% CI,

0.22-0.41, p <0.001). Specificity of the Xpert MTB/RIFand LF-LAM

among the 107 individuals without TB was more than 97%.

Urinary LAM testing with Xpert MTB/RIF was also highly

cost-effective compared to using either smear microscopy or Xpert

MTB/RIF alone. The study found that the incremental

cost-effectiveness ratio (ICER) when comparing the combination of 

Xpert MTB/RIF and LAM to smear alone was USD50 per

disability-adjusted life year (DALY) and USD29 when compared to

Xpert MTB/RIF alone.

ConclusionWhile the introduction of Xpert MTB/RIF has been hailed as one of 

the greatest achievements for the diagnosis of TB and MDR-TB, the

price of the machine and the cartridges is the main obstacle which

implementers face, despite the decrease in the price. Innovations to

reduce the price are necessary to ensure that this useful technology

can be scaled up and used effectively globally. As the India study

showed, the use of this technology is feasible when certain

measures are put in place.

Xpert MTB/RIF has demonstrated significant gains in intensified

case finding of TB and MDR-TB, as shown by numerous studies

presented at last year’s Union World Lung Health Conference. In

every study conducted in operational settings, there was a

significant increase in diagnostic yield, demonstrating the potential

for Xpert MTB/RIF to assisting in detecting all TB cases. The Xpert

MTB/RIF’s superior sensitivity in detecting TB, especially in

smear-negative cases is also greatly beneficial to people with

TB/HIV co-infection.

Most importantly, the two-hour turnaround time from sputum

specimen to result means that the time to treatment initiation can

be decreased significantly, as shown in the Sisonke District study by

TB/HIV Care Association.

However, challenges remain such as ensuring reliable electricity

supply and giving staff adequate training and supervision to avoid

uninterpretable results. These are aspects which will need to be

addressed going forward.

Further resources

http://www.who.int/tb/laboratory/mtbrifrollout/en/index.html

http://xrmt.treattb.org/

https://extranet.who.int/xpertmtbrif/content/home

References[1] World Health Organization.Rapid implementation of the Xpert MTB/RIF

diagnostic test: technical and operational ‘How-to’ practical considerations.

Geneva, March 2011

[2] Gilpin, C. Introduction and status of the global roll-out of Xpert MTB/RIF 

for the diagnosis of tuberculosis.43rd Union World Conference on Lung 

Health, Kuala Lumpur, 2012.

[3] http://www.who.int/tb/laboratory/mtbrifrollout/en/

[4] World Health Organization Stop TB Department.Update: Implementation

and roll-out of Xpert MTB/RIF . May 2012

[5] Gilpin, C. op cit

[6] Cohen D, Corbett S. Evidence supports TB test, so what now?[editorial].

Cochrane Database of Systematic Reviews 2013 Jan 31;1:ED000051. doi:

10.1002/14651858.ED000051.

[7] Naidoo, P. Does the introduction of the Xpert® MTB/RIF test result in an

increased TB diagnostic yield in a routine operational setting in Cape Town?

43rd Union World Conference on Lung Health, Kuala Lumpur, 2012.

[8] Raizada, N. Experience with implementation of Xpert MTB/RIF in India.43rd Union World Conference on Lung Health, Kuala Lumpur, 2012.

[9] Boy, S. The impact of the Xpert MTB/RIF assay for detecting 

Mycobacterium tuberulosis among TB suspects in Cambodia. 43rd Union

World Conference on Lung Health, Kuala Lumpur, 2012.

[10] Hausler, H. Using community resources and new tools for active TB

case detection in South Africa.43rd Union World Conference on Lung Health,

Kuala Lumpur, 2012. 

[11] Carter, J. Providing access to new diagnostics for vulnerable rural

populations in Kenya.43rd Union World Conference on Lung Health, Kuala

Lumpur, 2012.

[12] Anisimova,V et al. Rifampicin resistance as a proxy for multi-drug 

resistant tuberculosis in Botswana. 43rd Union World Conference on Lung 

Health, Kuala Lumpur, abstract OP-101-15, 2012.

[13] Hausler, H. op cit

[14] Raizada, N. op cit

[15] Shah, M. Comparative performance of rapid urinary lipoarabinomannan

assays and Xpert MTB/RIF in HIV+ TB suspects: Uganda. 20th Conference

on Retroviruses and Opportunistic Infections, Atlanta, abstract 127, 2013.

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•WHO Stop TB Department Xpert MTB/RIF roll out monitoring 

website

•Mapping of Xpert roll out research projects

•Data collection on the use of Xpert MTB/RIF by early

implementers since 2011