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FVCC:BioTech Morrison 1/25/2011 Page 1 Genetic Analyzer: ABI Sequence Analysis Module Prepared by: Bob Morrison STLCC- FV, Instrumentation Specialist Initiated: Sep 10, Last Update Dec 10 2010 ABI 3500 Genetic Analyzer

Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

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Page 1: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

FVCC:BioTech Morrison 1/25/2011 Page 1

Genetic Analyzer: ABI

Sequence Analysis Module

Prepared by: Bob Morrison

STLCC- FV, Instrumentation Specialist

Initiated: Sep 10, Last Update Dec 10 2010

ABI 3500 Genetic Analyzer

Page 2: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

Genetic Analyzer: Applied Biosystems Information

FVCC:BioTech_Morrison 1/25/2011 Page 2

Online Information and Worldwide Sites: www.appliedbiosystems.com/

Online Support and Information: www.appliedbiosystems.com/support/

Online Computer Session Support: abi.webex.com/

Equipment Information

Instrument Model: 3500 (ex: 3500 or 7900 or SOLID)

Instrument Serial Number: 22117-071 (ex: 2009XXX)

Computer Mfr Model: Optiplex 960 (ex: OptiplexTM 960 or Latitude E6500)

Computer Mfr Serial Number (SN): Service Tag H26PVL1 (ex: FMWXXXX)

Other Equipment & SN (as applicable): Xress Svc. Code: 37137517093 (

Software/Firmware Information

Computer Operating System & SP: Vista SP2 (ex: Win XP Pro SP3 or Vista Bus SP1)

Instrument Software & Version: DC1.0 (ex: Data Collection ver 3.0)

Other Software/Firmware & Version: GM4.1 (ex: Genepmapper 4.0)

Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3)

Other Software/Firmware & Version: VR1.1 (ex: SDS 1.2.3)

Products & Service: 800-831-6844

Field Service Engineer: John Buck

Link to ABI 3500 User Manual…pdf (18mb)

Link to Sequencing Protocol from BB …pdf

Page 3: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

GA: Select Seq A Icon, Login , then Sample Manager

Page 4: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

SA: Select Protocol for Analysis

Page 5: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

SA; Add Samples to Analyze

Page 6: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

Select Sample from Run, (may need to define path for locating

these)

Page 7: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

Select Add Selected Samples, then Review list

Page 8: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

Select Green Arrow to Start Analysis

Page 9: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

Results of Analysis

Page 10: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

Analysis Report Manager Summary

Page 11: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

Show column “2” and Sequence Tab Selected

Page 12: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

Electropherogram tab selected

Page 13: Genetic Analyzer: ABI Sequence Analysis Moduleusers.stlcc.edu/departments/fvbio/Genetic_Analyzer... · Other Software/Firmware & Version: Seq-A 5.4 (ex: Seq Analysis v5.3) Other Software/Firmware

Analysis Report for Well 2