Upload
hathuan
View
216
Download
0
Embed Size (px)
Citation preview
Fig. S1. p53 DNA contact mutants exhibit a stronger induction of the CGS
compared to the p53 conformational mutants
Six human tumor-derived cell lines that endogenously express different p53 mutants
and vary in their Ras status were stably infected with shRNA against p53 (shp53) or
with a control shRNA (shCon). (A) Table summarizing p53 and Ras status in the
cells lines. (B) mRNA levels of p53 were measured by Quantitative Real Time PCR
(QRT-PCR). (C) mRNA levels of representative CGS genes CXCL1, IL-1β and IL-8
were measured by QRT-PCR. shCon/shp53 fold changes were calculated and plotted
on graphs. Black bars represent lines expressing a p53 DNA contact mutants and gray
bars represent cell lines expressing p53 conformational mutants.
Fig. S2. p53 Zn+2 region conformational mutants expressing cells harbor elevated
levels of activated H-Ras
Ras activity pull down assay was carried out in the indicated WI-38 cell lines using
beads that are fused to Ras binding domain (RBD) via glutathione S-transferase
(GST) (GST-RBD). (A) Western blot analysis depicts the protein levels of active Ras,
total Ras, p53 and GAPDH as a loading control. (B) Quantification of the H-Ras-GTP
bands, normalized to β-tubulin, analyzed by ImageJ software.
Fig. S3. The wild-type p53 transcriptional target, p21WAF1, is not affected by the
expression of the various p53 mutants
(A) mRNA levels of the wild-type p53 target gene, p21WAF1, were measured by
Quantitative Real Time PCR (QRT-PCR) in the established WI-38 cell lines. (B)
H1299 p53-null cell line was transiently transfected with the following expressing
vectors: control empty vector (Con), wild-type p53 (p53 WT), p53R175H, p53G245S,
p53R248Q. Following 48 hours of transfection cells were collected and mRNA levels of
p21WAF1 were measured by QRT-PCR.
Fig. S4. The various mutant p53 forms attenuate wild-type p53 activity by a
dominant negative mechanism following DNA-damage
WI-38 cells were treated with cisplatinum (1µg/ml) or with DMSO (as a control) for
72 hours. p21WAF1 and BTG2 mRNA levels were measured by Quantitative Real Time
PCR in the indicated WI-38 cell lines.
Fig. S5. NFκB mediates the elevated induction of the CGS expression exerted by
the p53 DNA contact mutants
The indicated WI-38 cell lines were transfected with either si-RNA against p65 or
with a control si-RNA (si-Con). Cell were collected 72 hours post transfections. (A)
p65 protein levels were measured by western blot analysis. (B) CXCL1, IL-1β and
MMP3 mRNA levels were measured by Quantitative Real Time PCR (QRT-PCR).
The number above each bar represents the fold repression in each individual cell line
caused by p65 knock-down. (C) SW-620, SW-480 and SKBR-3 cell lines were
knocked-down for the endogenously expressed mutant p53. Western blot analysis
depicting the protein levels of p53 and the GAPDH housekeeping control protein in
the established cell lines. (D) The established SW-620 cells were transfected with
either si-RNA against p65 or with a control si-RNA (si-Con). p65 mRNA levels were
measured by QRT-PCR.
Fig. S6. The CGS levels are not elevated by the p53 conformational mutants
under basal conditions or TNF-α treatment
NCI-H322 and Hs-578-T cell lines, which endogenously express p53 conformational
mutants, were stably introduced with shRNA against p53, and then treated with
20ng/ml TNF-α for 24 hours. mRNA levels of p53, CXCL1, CXCL2 and IL-8 were
measured by Quantitative Real Time PCR.
Tables
Table S1: Primers for QRT-PCR:
Genes and promoters Sense Anti-sense
GAPDH ACCCACTCCTCCACCTTTGA CTGTTGCTGTAGCCAAATTCGT
CXCL1 AGTCATAGCCACACTCAAGAATGG GATGCAGGATTGAGGCAAGC
IL-1β GCCTGAAGCCCTTGCTGTAGT GCGGCATCCAGCTACGAAT
MMP3 ACAAAGGATACAACAGGGACCAA CAATTTCATGAGCAGCAACGA
BTG2 AGGCACTCACAGAGCACTACAAAC GCCCTTGGACGGCTTTTC
p21WAF GGCAGACCAGCATGACAGATT GCGGATTAGGGCTTCCTCT
H-Ras GCTGCATGAGCTGCAAGTGT CATCCGGCACCTCCATGT
p65 ACGAACTGTTCCCCCTCATCT TCCTTTCCTACAAGCTCGTGG
CXCL2 CGCCCAAACCGAAGTCATAG AGACAAGCTTTCTGCCCATTCT
IL-8 GGCAGCCTTCCTGATTTCTG CTTGGCAAAACTGCACCTTCA
Table S2: Primers for site directed mutagenesis:
Mutation Sense Anti-sense
p53R175H ATGACGGAGGTTGTGAGGCACTGCCCCCACCATGA
GCGCT
AGCGCTCATGGTGGGGGCAGTGCCTCACAACCTCC
GTCAT
p53H179R AGGCGCTGCCCCCACCGTGAGCGCTGCTCAGATAG
CGATG
CATCGCTATCTGAGCAGCGCTCACGGTGGGGGCAG
CGCCT
p53G245S TTCCTGCATGGGCAGCATGAACCGGAGGCCCATCC
TCACC
GGTGAGGATGGGCCTCCGGTTCATGCTGCCCATGC
AGGAA
p53R248Q GGCGGCATGAACCAGAGGCCCATCCTCACCATCAT
CACAC
GTGTGATGATGGTGAGGATGGGCCTCTGGTTCATGC
CGCC
p53R273H GGAACAGCTTTGAGGTGCATGTTTGTGCCTGTCCTG
GGAG
CTCCCAGGACAGGCACAAACATGCACCTCAAAGCT
GTTCC