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EOF and SVD

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EOF and SVD. Synthetic Example. Generate gridded data from three pressure patterns (think of it like a time series) Mean field is 1012mb Input patterns are orthogonal to each other. EOF Analysis of Synthetic Data. First 3 EOFs explain all the variance in the data - PowerPoint PPT Presentation

Text of EOF and SVD

EOF and SVD

EOF and SVDSynthetic ExampleGenerate gridded data from three pressure patterns (think of it like a time series)Mean field is 1012mbInput patterns are orthogonal to each other

EOF Analysis of Synthetic DataFirst 3 EOFs explain all the variance in the dataData can be completely reconstructed using only 3 patterns and 3 time seriesEOF method correctly finds the right number of independent patterns that make up the variability of the field

EOF Analysis of Synthetic DataThe anticyclonic pattern is correctly reproducedBut zonal and meridional patterns are notWe get eigenvectors that are a combination of theseSo even when the EOF method is applied on orthogonal input fields, we do not necessarily get EOFs that resemble the dataRotate with varimax function (see Appendix of EOF and SVD packet)Form a truncated eigenvector basis from first three eigenvectors already obtainedIn this case use all 3, but could use only a fewNow perform varimax rotationThis time we get the 3 types of input height fields

EOF ExamplesAnalysis of 40 years of SST in South AtlanticMonthly SST anomalies from equator to 50S over a 2x2 grid from 1983-1992Three leading EOF modes account (in total) for 47% of the monthly SST varianceEOF1: 30%EOF2: 11%EOF3: 6%

EOF shown as homogenous correlation mapTemporal variations of each eigenvector, represented by expansion coefficients

EOF1Mono-pole pattern over entire domainSquare of correlation represents the variance explained LOCALLYPC is dominated by mixture of interannual and decadal fluctuations

EOF2Out of phase relationship between temperature anomalies north and south of ~25SPCs consist of interannual and lower frequency oscillations

EOF3Three alternating signs of signalPCs consist of mostly interannual timescales

SVD ExampleMonthly anomalies of SST and SLP analyzed together over the same spatial and temporal grid as in the EOF exampleThe SVD analysis will identify only the modes of behavior in which the SST and SLP variations are strongly coupledTogether the 1st 3 modes account for 89% of the total square covariance

SCF=Squared Covariance Fractionr: Correlation Coefficient between the expansion coefficients of both variablesIndicates strength of couplingParentheses are 95% significance levelsSpatial Pattern 1 and Time Series for Pattern 1

Strengthening and weakening of the subtropical anticycloneAccompanied by fluctuations in a north-south dipole structure in ocean temperatureBoth time series are dominated by interdecadal oscillationsSpatial Pattern 2 and Time Series for Pattern 2

East-west displacements of the subtropical anticyclone centerAccompanied by large SST fluctuations over a broad region off the coast of AfricaLow frequency interannual oscillationsSpatial Pattern 3 and Time Series for Pattern 3North-south displacements of the subtropical anticycloneAccompanied by large SST fluctuations over a latitudinal band in the central South Atlantic oceanHigh frequency interannual oscillations

Examples from Model Data (CCSM3)From project last year using model data from CCSM3 on ENSOFirst thing to do is read in data:clear all

%read in datalat=[-87.8638, -85.0965, -82.3129, -79.5256,-76.7369, -73.9475, -71.1578,-68.3678,...-65.5776, -62.7874, -59.997, -57.2066,-54.4162, -51.6257, -48.8352,-46.0447,...-43.2542, -40.4636, -37.6731, -34.8825,-32.0919, -29.3014, -26.5108,-23.7202,...-20.9296, -18.139, -15.3484, -12.5578,-9.76715, -6.97653, -4.18592, -1.39531,...1.39531, 4.18592, 6.97653, 9.76715, 12.5578,15.3484, 18.139, 20.9296, 23.7202,26.5108,...29.3014, 32.0919, 34.8825, 37.6731, 40.4636,43.2542, 46.0447, 48.8352, 51.6257,54.4162,...57.2066, 59.997, 62.7874, 65.5776, 68.3678,71.1578, 73.9475, 76.7369, 79.5256,82.3129,...85.0965, 87.8638];lon=[0:2.8125:357.1875];%get slpfid=fopen('slp.dat','rb');slpall=fread(fid,'float');slp=reshape(slpall,[128 64 600]);%change 600 based on your timeslp=permute(slp,[2 1 3]);fclose(fid);clear sstall%get sstfid=fopen('sst.dat','rb');sstall=fread(fid,'float');sst=reshape(sstall,[128 64 600]);%change 600 based on your timesst=permute(sst,[2 1 3]);fclose(fid);clear sstallExample using seasonal analysis%to get seasons slpDJF(:,:,1)=(slp(:,:,1)+slp(:,:,2))./2;c=13;for yr=2:50 slpDJF(:,:,yr)=(slp(:,:,c-1)+slp(:,:,c)+slp(:,:,c+1))./3; c=c+12;end

c=1;for yr=1:50 slpMAM(:,:,yr)=(slp(:,:,c+2)+slp(:,:,c+3)+slp(:,:,c+4))./3; slpJJA(:,:,yr)=(slp(:,:,c+5)+slp(:,:,c+6)+slp(:,:,c+7))./3; slpSON(:,:,yr)=(slp(:,:,c+8)+slp(:,:,c+9)+slp(:,:,c+10))./3; c=c+12;endCompute EOFs%to calculate EOFscoslat3d=ones(64,128,50);for j=1:length(lat) coslat3d(j,:,:)=cos(lat(j)*pi/180);endX=reshape(slpDJF.*sqrt(coslat3d),[64*128 50]);

%remove time meanfor i=1:(64*128) X(i,:)=X(i,:)-mean(X(i,:));endX2=permute(X,[2 1]);

[COEFF,SCORE,latent,tsquare]=princomp(X2);

explained = latent/sum(latent(:)) .*100;explained(1:4)[COEFF,SCORE] = princomp(X) returns SCORE, the principal component scores; that is, the representation of X in the principal component space. Rows of SCORE correspond to observations, columns to components.

[COEFF,SCORE,latent] = princomp(X) returns latent, a vector containing the eigenvalues of the covariance matrix of X.

[COEFF,SCORE,latent,tsquare] = princomp(X) returns tsquare, which contains Hotelling's T2 statistic for each data point.Compute EOFs (Continued)%for EOF 1eof1=reshape(COEFF(:,1),[64 128]);pc1=SCORE(:,1);%for EOF 2eof2=reshape(COEFF(:,2),[64 128]);pc2=SCORE(:,2);%for EOF 3eof3=reshape(COEFF(:,3),[64 128]);pc3=SCORE(:,3);%for EOF 4eof4=reshape(COEFF(:,4),[64 128]);pc4=SCORE(:,4);Some Examples of EOFshttp://team-climate-diagnostics.wikispaces.com/Seasonal

http://team-climate-diagnostics.wikispaces.com/Annual

http://team-climate-diagnostics.wikispaces.com/Decadal

Some More Exampleshttp://mpo581-hw3-eofs.wikispaces.com/Assignment

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