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DNA Repair DNA Repair
Uracil-DNA Glycosylase
DNA is continually assaulted by damaging agents (oxygen free radicals, ultraviolet light, toxic chemicals).
Fortunately, the cell has multiple mechanisms to identify and correct mutations.
Yeasts have 50 different enzymes involved in DNA repair.
Damage occurs in the form of deletions and mutations (changes in the sequence of DNA bases that make up the genetic code).
The DNA repair process may be a major factor in aging, health, and longevity.
An animal's ability to repair certain types of DNA damage is directly related to the life span of its species
Genetic defects in DNA repair are associated with genetic or familial susceptibility to cancer.
Figure from the Duke University Medical Center and the Graduate Program in Molecular Cancer Biologyhttp://mcb.mc.duke.edu/
Cell nuclei and chromosomes from a human brain tumor
Mitochondrial DNA is more susceptible to damage than nuclear DNA. Furthermore, mitochondrial DNA damage increases exponentially with age.
Several diseases that appear late in life, including late-onset diabetes, have been traced to defects in mitochondria.
Causes of Mutations
DNA replicationSpontaneous depurination and deaminationUV lightOxidationChemically induced
DNA Mismatch Repair (E. coli)How does the cell know which strand
to repair?Deoxyadenosine methylase (dam)Old DNA methylatedNew DNA unmethylatedMismatch repair system cuts
unmethylated DNAIn eukaryotes the recognition may be
nicks.
DNA Repair and Cancer
Do humans have a mismatch repair system?
hMSH, human Mut S HomologhMLH, human Mut L HomologWhat phenotype would be expected
from a mutation in hMSH or hMLH?Hereditary nonpolyposis colon
cancer (HNPCC), Lynch syndrome II
Depurination and Deamination
Loose A or G
Loose NH2 groups from C (forms U)
Base-Excision Repair Pathway All organisms contain a specific repair
pathway which removes uracil from DNA.
DNA Damage From UV Light
Single-strand breaks - mostly sealed by DNA ligase so don't contribute to lethality
Double-strand breaks - often lethal because can't be resealed by ligase so degraded by nucleases
Alteration of bases - this type of oxidative damage is usually lethal because forms a replication barrier at that site
Ionizing radiation causes three types of damage to DNAIonizing radiation causes three types of damage to DNA
uvrABCD Repair System
What would be the phenotype in humans from an accumulation of thymine dimers in somatic cells?
What would be the phenotype in humans from mutations in uvrABCD genes?
Xeroderma Pigmentosum (XP)
Disorders Associated with Defective DNA Repair
Xeroderma pigmentosum (XP)Skin photosensitivity; Early onset skin cancer
Cockayne SyndromeDwarfism; Precociously senile appearance Sensitivity to sunlight
Bloom Syndrome
Dwarfism, low-birth-weight type;
Life-threatening infections Predisposition to neoplasia
Helicase: Bloom syndrome (genomic instability in somatic cells, leads to telangiectatic facial erythema, photosensitivity, dwarfism and other abnormalities)
BRCA1 DNA repair protein Breast and Ovarian cancer, early onset
MSH2 DNA repair protein Hereditary non-polyposis colon cancer
Mutations in DNA repair genes lead to an increase in the frequency of other mutations.
Ataxia-Telangiectasia
Approximately 10% of children diagnosed with AT will develop a malignancy in childhood or early adulthood.
The gene defect in AT patients allows the formation of a much higher level of chromosome translocations.
Transcription occurs in nucleus, translation occurs in cytoplasm:
RNA must move across nuclear membrane.
Transcription in eukaryotes Transcription in eukaryotes
Regulation involves multiple enzymes & proteins -30 'TATAAAA' (Hogness box) promoter -50 ~ -500 enhancer sequences control rate
Post-transcriptional processingPost-transcriptional processing
poly-A 'tail' (5'-AAAAAA-etc-AAAAAA-3') added to 3' end (Fig.12.10a) 7mG 'cap' (7-methyl guanosine, 7mG) added to 5' end splicing of heterogeneous nuclear RNA (hnRNA) (Fig.12.10b) up to 90% of transcript is removed exons are retained ("expressed") introns are removed ("intervening") 10 ~ 20 exons / 'gene'