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Demo in WP3: Phylogeny. Raúl Isea 1 , Fernando Blanco 2 , Rafael Mayo 2 1 CECALCULA 2 CIEMAT 1 st EELA Conference Santiago, 4 -5.09.2006. HYPOTHESIS. Phylogeny is for the determination of the evolution of the species Two species share a genetic origin. HYPOTHESIS. - PowerPoint PPT Presentation
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FP6−2004−Infrastructures−6-SSA-026409
www.eu-eela.org
E-infrastructure shared between Europe and Latin America
Demo in WP3: Phylogeny
Raúl Isea1, Fernando Blanco2, Rafael Mayo2
1CECALCULA 2CIEMAT1st EELA ConferenceSantiago, 4-5.09.2006
Santiago, 1st EELA Conference, 4-5.09.2006 2IST-2006-026409
E-infrastructure shared between Europe and Latin America
Phylogeny is for the determination of the evolution of the species
Two species share a genetic origin
HYPOTHESIS
Santiago, 1st EELA Conference, 4-5.09.2006 3IST-2006-026409
E-infrastructure shared between Europe and Latin America
HYPOTHESIS
Before Phylogeny After Phylogeny
Santiago, 1st EELA Conference, 4-5.09.2006 4IST-2006-026409
E-infrastructure shared between Europe and Latin America
COMPUTING
The number of trees depend on the number of sequences
# sequences # no root # root
Trees without root Trees with root
Santiago, 1st EELA Conference, 4-5.09.2006 5IST-2006-026409
E-infrastructure shared between Europe and Latin America
COMPUTING
Add taxons A and B
Add taxon CWith 3 seqs only 1 tree
Add taxon D
Add taxon E and so on
Adding Sequences (taxons)
Santiago, 1st EELA Conference, 4-5.09.2006 6IST-2006-026409
E-infrastructure shared between Europe and Latin America
EXAMPLE
Human Evolution with 12 ADN sequences
Santiago, 1st EELA Conference, 4-5.09.2006 7IST-2006-026409
E-infrastructure shared between Europe and Latin America
EXAMPLE
MrBayes determines the best Phylogeny Tree
1000 phylogeny trees are generated in 10000 targets
Santiago, 1st EELA Conference, 4-5.09.2006 8IST-2006-026409
E-infrastructure shared between Europe and Latin America
RESULTS
Santiago, 1st EELA Conference, 4-5.09.2006 9IST-2006-026409
E-infrastructure shared between Europe and Latin America
RESULTS
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E-infrastructure shared between Europe and Latin America
RESULTS
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E-infrastructure shared between Europe and Latin America
RESULTS
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E-infrastructure shared between Europe and Latin America
RESULTS
TreeView generates the graphical output
Human body becomes from Primates
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E-infrastructure shared between Europe and Latin America
Thanks for your attention!
