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Biomarkers David Barber [email protected] 352-392-2243 ext. 1-5540

Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

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Page 1: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Biomarkers

David [email protected]

352-392-2243 ext. 1-5540

Page 2: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Reduced population of GulfSturgeon in Suwannee River

• What factors contribute to populationlevels?

• How would you determine which one isbeing affected in this case?

• If you believe it is an anthropogenicchemical that is impacting the population,How do chemicals get into water supplies?

• What happens to chemicals during thisprocess?

Page 3: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Populations

# of individuals in population

Reproduction

Emigration

Mortality

Immigration

•How long an effect takes to manifest inpopulation levels often depends onlongevity and rate of reproduction

Page 4: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Population structure

Age Class

0 2 4 6 8 10

% o

f all in

div

idu

als

in a

ge

cla

ss

0

5

10

15

20

25

30

Page 5: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Chemical Effects on Populations

Concentration of Chemical "X"

0 10 20 30 40 50 60

Bir

th a

nd

De

ath

Ra

tes

0

20

40

60

80

100

120

Birth Rate

Death Rate

Page 6: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Chemical Inputs into WaterSources

From “Fundamentals of Ecotoxicology”, Newman and Unger, eds.

Page 7: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Suwannee River Watershed

Page 8: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

What’s happening to chemicals asthey enter bodies of water?

• Dilution• Microbial and photodegradation

– Depends on chemical• Binding to particulates and organic matter

– Leads to sedimentation– Often related to hydrophobicity

• Bioaccumulation– May be none in the water, but very high in food items– Can lead to large differences in effect across species

due to diet

Page 9: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

What are the challenges foridentifying impacts in aquatic

toxicology?• Systems are complex

– Biological and chemical complexity• Contaminant concentrations are often low• Inputs are often sporadic• In many aquatic systems, contaminants

dissipate quickly due to flow• This ain’t CSI…

– Analytical methods are incredibly sensitive,but you need to know what you are looking for

Page 10: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

How can we narrow down thesearch?

•Look for changes in the organism that areindicative of exposure to specific chemicalsor classes of chemicals•Biomarkers or bioindicator

Quantifiable biochemical, histological orphysiological measures that relate in a dose-ortime-dependant manner the degree of dysfunctionproduced by contaminants (Mayer et al., 1992; in:Biomarkers, edited by Huggett et al., SETACPress)

Page 11: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Types of Biomarkers• Biomarker of Exposure

– Presence of xenobiotic substance or a metabolitewithin an organism

• Biomarker of Effect– Measurable biochemical, physiologic, behavioral

changes in an organism that are recognized disease or health impairment

• Biomarker of Susceptibility– Endpoints that are indicative of altered biochemical or

physiologic state that predispose individual tochemical or infectious agents.

Page 12: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

From Metcalf and Orloff, 2004

Page 13: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Biomarkers of Exposure

• Usually the exogenous chemical, itsmetabolites, or product of interactionbetween chemical and a target molecule.– Usually measured in easily obtained samples– May not identify source of exposure

• Long-lived chemical– Identify PCBs, dioxin, OCPs directly in blood

or tissue

Page 14: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Elimination of Chlorpyrifos incatfish

Barron et al., 1991, TAAP 108:474

Page 15: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Examples of exposurebiomarkers

• Short-lived chemical– Identify metabolites such as p-nitrophenol

from methyl parathion, or TCP fromchlorpyrifos in urine

– Biliary metabolites of PAHs

Page 16: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Adducts

• When it is difficult to measure measurematerial directly, it is possible to look atreaction products of material

• Really only works for compounds that arereactive or have reactive metabolites– DNA– Protein– Indicative of reaction of active form of

compound with biological material

Page 17: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

BAP activation and adduct formation

Page 18: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

From Winter et al., 2004, Mutation Res, v. 552

Page 19: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Limitations of exposure biomarkers

• Provide information about absorbed dose,but don’t tell you anything about whetheror not the exposure caused an effect

• Detection can be misleading due tosensitivity of modern analyticalinstrumentation

Page 20: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Concentration analogies• One-Part-Per-Billion

one 4-inch hamburger in a chain of hamburgers circling the earth at theequator 2.5 timesone silver dollar in a roll of silver dollars stretching from Detroit to Salt LakeCityone kernel of corn in a 45-foot high, 16-foot diameter siloone sheet in a roll of toilet paper stretching from New York to Londonone second of time in 32 years

• One-Part-Per-Trillionone square foot of floor tile on a kitchen floor the size of Indianaone drop of detergent in enough dishwater to fill a string of railroad tankcars ten miles longone square inch in 250 square milesone mile on a 2-month journey at the speed of light

• One Part Per Quadrillionone postage stamp on a letter the size of California and Oregonone human hair out of all the hair on all the heads of all the people in theworldone mile on a journey of 170 light years

Page 21: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Biomarker of Effect

• A measurable biochemical or physiologicalchange in a biological system that iscorrelated with the development ofadverse effects– Usually early in the process, so is predictive of

effect

Page 22: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Cholinergic neurotransmission

Page 23: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Cholinesterase Inhibition

•Organophosphateand carbamateinsecticides bind toAChE and inhibit theenzyme•Allows ACh tobuildup, leading tooverstimulation ofreceptors withensuing SLUDsymptoms

Page 24: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Cholinesterase Inhibition

• The organophosphate and carbamateinsecticides are generally potent inhibitors ofAChE, some also inhibit BChE and CBxE. OPsare irreversible, carbamates are reversible

• Inhibition of RBC AChE or plasma BChE is goodmarker of exposure, inhibition of brain AChE iswell correlated with toxicity (though really needat least 50% inhibition to cause observable signsof toxicity).

Page 25: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

• Blood is good because it doesn’t require killingthe animal, can also do serial sampling

• Activity usually remains depressed for days toweeks after OP exposure. This is good,because chemical itself is rapidly hydrolyzed inbody and in environment.

• Activity varies with species, temperature, age(length), sex; so care must be used withinterpretation. Good to have concurrent controlsfrom non-contaminated site.

Page 26: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

From Whitehead et al.,2005, Ecotoxicology 14.

Reference site Exposed site

Page 27: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Metabolic Enzyme Induction• Some P450s are

inducible by exposureto xenobiotics

• CYP1A1 is stronglyinduced bycompounds that bindto thearylhydrocarbonreceptor (AhR) suchas PAHs and dioxin

• How do you measureCYP1A?

Page 28: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

• CYP1A1 is major catalyst of ethoxyresorufin-O-dealkylation (EROD)– Assay is easy, but requires samples of liver to

perform. Samples must be handled carefully tomaintain activity.

• Western blotting for P450s is more isoformspecific and not as sensitive to handling. Manyspecies cross-react, but must use care tovalidate.

• Many compounds can induce CYP1A1• Induction lasts for some time• There are non-lethal methods of analyzing P450

activity, but most are not useful in ecologicalspecies

Page 29: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Effects of Paper Mill Effluents onLargemouth Bass Reproduction

Cedar Creek

Palatka

Etonia Creek

Rice Creek

Welaka

Dunn’sCreek

10 Km0

N

Mainstream Reference

Tributary ReferenceSt. Johns River

Location of Paper Mill Plant(direction of River flow is North)

Tributary Effluent-exposed

Tributary Effluent-exposed

Field Sites in North-East Florida

Page 30: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Source: Sepúlveda, Gallagher, Gross. (2004). Ecotoxicol. 13: 291-301.

2

4

6

8

10

12

Tributary

Reference

Mainstream

Reference

Tributary

Exposed

Mainstream

Exposed

pmol

/reso

rufin

/mg/

min

FemalesMales *

10 10

7

6

10

10 6

5

*

Hepatic EROD activity as a measureof exposure to paper mill effluents

Proteins: CYP450s

Page 31: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Endocrine Disruption

• Many chemicals have the ability to alter functionof the endocrine system

• May lead to reproductive or developmentalproblems

• A major group is chemicals that are considered“estrogenic” or interact with the estrogenreceptor

• How can you determine if an organism has beenexposed to an estrogenic substance?

Page 32: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Oocyte development andVitellogenein

• major component of eggyolk.

• synthesized in the liver inresponse to estradiol andthen secreted into bloodfor transport todeveloping follicles.

• Normally absent or verylow in male and juvenileegg laying animals.

Page 33: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

• Induction of Vtg is fairly sensitive marker ofeffect for estrogenic compounds in males andjuveniles. Decreased Vtg in females has beencorrelated with poor reproductive success.

• Protein levels remain high in blood for weeksfollowing exposure.

• Western blots, ELISA, and mRNA assays• Not clear how well Vtg induction correlates with

adverse effects.

Page 34: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

From Diniz et al., 2005, STE, v. 349

Page 35: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Oxidative Stress

Page 36: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Consequences of Oxidative Stress

• Lipid peroxidation– Leads to loss of membrane fluidity which can alter activity of

membrane proteins and membrane permeability– Formation of reactive aldehyde products, 4-HNE, acrolein– Oxidized fatty acids can have biological activity- isoprostanes

• Protein oxidation– Oxidation of residues in proteins, especially thiols, can lead to

loss of activity and changes in redox status that modulate genetranscription

• DNA oxidation– Oxidation of DNA bases leads to strand breaks and mutations

Page 37: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Antioxidant enzymes• Superoxide Dismutase (SOD)

– Converts superoxide to hydrogen peroxide– Two forms Cu,Zn-SOD (cytosolic), MnSOD (mitochondrial)

• Catalase– Converts hydrogen peroxide to water and oxygen– Not functional on long chain peroxides, e.g. lipid hydroperoxides

• Glutathione Peroxidase– Selenoprotein in mitochondria and cytosol– Converts peroxides to alcohol and water at expense of GSH– Acts on hydrogen peroxide and organic hydroperoxides– Some GSTs will also act similarly on LOOH

ROH + H20

ROOH GSH

GSSG NADPH

NADP

Page 38: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Markers of Oxidative Stress

• GSH/GSSG ratio• TBARS

– Measures MDA, product of lipid peroxidation– Isoprostanes are more specific (F2)

• Enzymes– Catalase– SOD– GSH peroxidase

Page 39: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the
Page 40: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Metallothionein

• Small, thiol rich protein that strongly bindsmany divalent metals including cadmium,zinc, cobalt, copper and mercury

• Induced in response to these metals, somay serve as a potential biomarker

• Fairly complicated to assay MTs• May be faster and cheaper to just look at

metals themselves

Page 41: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the
Page 42: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Heat Shock Proteins (HSP)• Proteins that are thought to serve primarily as molecular

chaperones, promoting correct folding of proteins• Classified according to MW (e.g, HSP25, 70, 90), but

can be constitutive and inducible forms that are similar insize (HSP70)

• Are induced by improperly folded proteins which activateHSF and increase HSP expression

• Can be induced by temperature, infection, ischemia,xenobiotic toxicity (metals, oxidative stress)

• For many species, there are good Ab available that areuseful for Westerns and immunohistochemistry

• Not specific to a particular chemical or class ofchemicals, but more indicative of cellular stress

Page 43: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the
Page 44: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

BiologicalResponse

Exposure/Stress LevelHigh Low

Molecular

Biochemical

CellularTissue

SystemicOrganism

PopulationEcosystem

Biomarkers Can be Measured at DifferentLevels of Biological Organization:

Paradigm for ecological assessment

Temporal ResponseMin/hours Days Weeks/Months Years

BiologicalGenerations

Ecological Relevance

Mechanistic Relevance

Page 45: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Criteria for useful biomarkers• Accuracy• Reproducibility• Sensitivity• Specificity• Plausibility

– How good is the link with outcome• Temporal characteristics• Ease of sampling• Throughput

Page 46: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Potential sources for biomarkerevaluation

• Field collection of samples– Air, water, soil, tissues

• Caged animals• Archived samples• Lab exposures

– Really for development and validation

• Each source has pros and cons. Choicebased on availability and use of data.

Page 47: Biomarkers-for Andy Kane's class · •Biomarkers or bioindicator Quantifiable biochemical, histological or physiological measures that relate in a dose-or time-dependant manner the

Concluding Thought

• To really use biomarkers, must haveexposure and effect. Without both, it isvery difficult to establish causality as mostbiomarkers of effect are not specific.